Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02022 ATGGAAACGTTGAGCTACCAGGCTCCCTGTGATAGCCTTTCTGTTGGAGTGACTCCTGCAAGTCCAAGCAAACCATTGCAGAATCCACAGAAGAAACTTGAGGAAGAAGAAGAGGGAGAAAAAGAGAAAAAAGGAGATACTTTACTGGATCTAAATGTCCCTGGTGATGATTCTGCTACTGGGTGCAGTCCGGTGCTGAATCTCATCACTTGTCTGGAAGCGGATTTGTCATCAGAAGACCCCCATGAGCCGAGAGTGTTCTCTTGCAACTACTGTCAGAGGAAGTTCTACAGTTCACAAGCTCTTGGTGGACACCAAAATGCTCACAAAAGAGAAAGGTCCATAGCAAAGAAAAGTCACAGATCAGTATCAACCATGGTGGCCCCAGCAACAGCTTTTGGAATTCCCTTTCTCCACAATCACCTTCCTCACTATCCCACTGTGGCTTCTCTGCCTCTCCATGGTGCTTTTGGTAATAAACCGCTTGGAATTCAGACTCACTGCATGATTCATAGGCCTCCTCCTCTTCTTCCTCCTCACTTCTCATTCAATGGTTTTTCAAACACTTTTGGACATCATAATGGGTGGTCAAGACCCCTTATTACTCAACAACCTGGGATAGGGAAGTTAACTATGGAAAGTTGTCGCAAAACATCACGAGACAAAGTTGACAGATTACAACTCAAGTCAGCAGGTAATGAAGAAATAAGTGAATATCTGGTTAGTGGAAATACTGGTTTGAAGACTGGTCAAGAGAAAAAGAAGCACCTTGACTTGTCCCTAAAACTCTAA 792 0.4407 METLSYQAPCDSLSVGVTPASPSKPLQNPQKKLEEEEEGEKEKKGDTLLDLNVPGDDSATGCSPVLNLITCLEADLSSEDPHEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKKSHRSVSTMVAPATAFGIPFLHNHLPHYPTVASLPLHGAFGNKPLGIQTHCMIHRPPPLLPPHFSFNGFSNTFGHHNGWSRPLITQQPGIGKLTMESCRKTSRDKVDRLQLKSAGNEEISEYLVSGNTGLKTGQEKKKHLDLSLKL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02022 263 MobiDBLite consensus disorder prediction 29 50 - -
Vian4g02022 263 SUPERFAMILY beta-beta-alpha zinc fingers 84 115 IPR036236 -
Vian4g02022 263 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vian4g02022 263 Gene3D Classic Zinc Finger 73 132 - -
Vian4g02022 263 MobiDBLite consensus disorder prediction 1 50 - -
Vian4g02022 263 MobiDBLite consensus disorder prediction 1 28 - -
Vian4g02022 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vian4g02022 263 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 263 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02022 Vian-Chr4 36883048 36883839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02022 34 263 C2H2 Transcription Factor Family AT5G10970 38.583 1.61e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian4g02022 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00470 7 11870384 11871274 Vian4g02022 4 36883048 36883839 PCT