Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02017 ATGAAAAAGAACCTTCTTTTTGTGTTTATTCTTCTTCTGCATTGCGTTGCTGCTGCAGACCCTCCTGCTTCCTCTCCTCAACTTCCACCTGATCTCTCTCCAGGGGAGGGGCAGCATCACCTGCACAAGAAAATGCTAGTAGCTATTGTCGTAGCCACCATTTCACTTGCTGCACTCATTTTCGGTTTCTTATGTTTCTGGATTTATCACACTAAGTGTCCAACAAAATCCAAAACCAAAAAGGTTCAAACTCCTGGTCCAGATGCAGAGAGGGGGATCACCCTTGCGCCGTTTCTGAGCAGATTCAGTTCCGTCAAAATTGTTGGTATGAAGGAGTCTGTGCCGATAGTTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTGAGGAAAGTAACATCTTGGGCGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGGTTGGATCATAATCTGGATGTTGCAGTAAAAAAACTACACTGCGAGACTCAACATGCGGAAAGAGAATTCGAGAATGAGGTGAAATTGTTAAGCAAAATTCAGCATCCGAATATAATCTCCTTACTGGGTTGTAGCGCTGATGGTGACACGAGGTTTATTGTTTATGAGTTGATGCAAAATGGATCATTGGAAGCTCATTTACATGGACCTACTCATGGCTCGGCATTGACATGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGACTAGAATATCTGCATGAGCACTGCTACCCTGCAGTGATCCACAGAGACATGAAATCTTCCAATATTCTCTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACCTTAGGATACGTAGCACCGGAGTATCTTCTAGATGGTAAATTGAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTATTGGAGCTTCTATTAGGAAGGAGGCCAGTGGAAAAACTGGCACCGACGCAATGCCAGTCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGAGCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGGACACGATGGATCATAAACACTTGTACCAGGTTGCTGCTGTAGCTGTGCTATGCGTGCAACCAGAGCCTAGTTATCGCCCTCTCATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTCGGAGGAACACTGAGAGTTTCGCAAGTGAGGCAGCATGCCTCTCTTGCTGTGAATTACCGTCTTTGA 1287 0.4444 MKKNLLFVFILLLHCVAAADPPASSPQLPPDLSPGEGQHHLHKKMLVAIVVATISLAALIFGFLCFWIYHTKCPTKSKTKKVQTPGPDAERGITLAPFLSRFSSVKIVGMKESVPIVDYKQIEKTTNNFEESNILGEGGFGCVYKARLDHNLDVAVKKLHCETQHAEREFENEVKLLSKIQHPNIISLLGCSADGDTRFIVYELMQNGSLEAHLHGPTHGSALTWHMRMKIALDTARGLEYLHEHCYPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRRPVEKLAPTQCQSIVTWAMPQLTDRAKLPNIVDPVIKDTMDHKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVRQHASLAVNYRL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02017 428 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Vian4g02017 428 CDD STKc_IRAK 135 402 - -
Vian4g02017 428 SMART serkin_6 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02017 428 Gene3D Phosphorylase Kinase; domain 1 95 204 - -
Vian4g02017 428 Gene3D Transferase(Phosphotransferase) domain 1 205 404 - -
Vian4g02017 428 PANTHER OS01G0750732 PROTEIN 39 403 - -
Vian4g02017 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vian4g02017 428 Pfam Protein kinase domain 129 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02017 428 ProSiteProfiles Protein kinase domain profile. 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02017 428 SUPERFAMILY Protein kinase-like (PK-like) 107 399 IPR011009 -
Vian4g02017 428 FunFam Protein kinase superfamily protein 96 204 - -
Vian4g02017 428 FunFam probable receptor-like protein kinase At1g80640 205 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02017 Vian-Chr4 36819825 36822845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02017 36 403 Receptor kinase-like Gene Family AT3G58690 43.085 5.83e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vian4g02017 Pkinase 6.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02017 - - gmx:100784795 701.434