Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02012 ATGGATCAAGATAGAGGTGAAGTATTGGATCCGGTTCATGACAAGAGTTTAAGTCATTTGGTTGAACGGGTTGCAATTGCTAGCGACAGTACAAGTGAAGAAGCTGGAACTTCGAGACGGGTCGATGAGAATTCAGGATCTGATAAGGAGCTAAAGGAGGAAGTTAAGGGTCAAGACAATCATGGTCGAGAAAATTTCAGTGATAAGTTACCTGGGGTTGATCAGGGAACTTGTAATTCAAACCATTTGGTTAATCAAGAAGTGATTGAAAGTGTGATTGTGATTGACCCTATTCGGACTGAGTACATGAATGAAGATAATAGGAAATTGGAAGTAAAAGTTGAGGAATCGGGGTTGAGCTTGGGGTCCATGAAAGCAGCAAAAGAGGTGTCTGAAACTGATAAAAGTTCATGTGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTATATGACGATTCTGAAGGTGAAACAATTTGTAGGATTTGCCATCTGACTTCTGGTCAATCACCGGATGTAACAATTGTTGGCACTGCTAATAGTGCTACAAGAGTAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAACTAGGCATCGCGCACGTTCACTGTGCTGAGGCGTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGTGAGCCTGCAAAAAATGTTTCAGGTGTTAGCAGTAATGGGTTTATAGAAGAGTGGAATGAAAGAAGATTCATGGACAACGATGGTAACTCATCCCCAAGAGTTCTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTGATAGCTTTTGTTCTGCCTTGGTTTTTTCGTGTAAATATGTTCTAG 867 0.4164 MDQDRGEVLDPVHDKSLSHLVERVAIASDSTSEEAGTSRRVDENSGSDKELKEEVKGQDNHGRENFSDKLPGVDQGTCNSNHLVNQEVIESVIVIDPIRTEYMNEDNRKLEVKVEESGLSLGSMKAAKEVSETDKSSCVIDIKCSSHKKLYDDSEGETICRICHLTSGQSPDVTIVGTANSATRVDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVSSNGFIEEWNERRFMDNDGNSSPRVLGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02012 288 ProSiteProfiles Zinc finger RING-CH-type profile. 152 228 IPR011016 GO:0008270
Vian4g02012 288 SUPERFAMILY RING/U-box 155 224 - -
Vian4g02012 288 MobiDBLite consensus disorder prediction 24 78 - -
Vian4g02012 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 234 IPR013083 -
Vian4g02012 288 SMART ringv_2 159 222 IPR011016 GO:0008270
Vian4g02012 288 MobiDBLite consensus disorder prediction 35 68 - -
Vian4g02012 288 Pfam RING-variant domain 160 221 IPR011016 GO:0008270
Vian4g02012 288 PANTHER ZINC FINGER, RING-CH-TYPE 31 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02012 Vian-Chr4 36766753 36768806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02012 140 287 C3H Transcription Factor Family AT5G05830 40.523 5.40e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02012 - - gmx:100776373 447.588