Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01997 ATGGGAAAGCCCTCAGGGAAGAAGAAGGGTATCGCTACTCCGGCTACTGCAAATTCACATGCCAAACCTGCCAAGTCCTCCAAGGCTTTCGATGAAGATACAGCAATGTTCATTAACATGTCACAAGAGTTCAGAGAAGAAGGTAACAAGTTGTTTCAGAAGAAGGATCACGAAGGCGCCATGCTCAAGTACGAGAAGGCACTGAAGCTGCTTCCGAAGAACCACATAGATGTCGCACACCTTCATACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAATACCCTCGAGCCATTCACGAATGCAATTTGGCGCTGGAAGTGTCTCCAAGGTACAGCAAAGCTCTTCTGAAAAGAGCCACATGCTATCGTGAGCTTAATCGCTTGGATTTGGCGCTAAGGGATGTTAATCTTGTTTTGAGCATGGAGCCAAATAACCTCACCGCTTTGGAGCTTCTCGAGAGTCTCACGAAGTCAACGGAAGAAAAGGGGGTCCCTGTTGATGATAAAAGGGTGGCTTTTGATACCACCGTTTATCATTCTCCTTCTCCTTCTTCGCAAAAACTGAAGAAGAAGAGAGGTAAAAAAATTGAGGACAAGGTGGTTGTGGAGGAAAAGCTGGGTTTGATTGTTGAGGATAAAAAGGTGGTTTCCAAACCAATTGGGCAAGAAGGCAAGGTGGTTTCCAAAACAATAGGGCAAGAAGGCAAGGTGGTTTCAAAAACAATTGAGCAAGTAAAAGAGTTGGATTCAAAAACAATTGAGCAAGTACAAGAGTTGGATTCAAAAACAATTGAGCAAGTAAAAGAGTTAGATTCAAAAACAACTGAGCAAGAAAAAAAGGTGGTGGAAATCAAACCTGTGGAGGAAGAAAAAACTGTCACGATCACAAGGAGCGTGAAGTTGGTGTTTGGAGAAGATATAAGGTGGGCTCAGTTACCCGTGAATTGTAGCGCCAAGTTGGTGAGGGATATAGCCAGGAATCGGTTTCCAGGTTTGAAGGGAGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACTACTACAGATGAACTAAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTACTGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAACAACAACCAATGGGAATGAAGTGCAAAGGGATGGTGAAAATCAAAATGATGGTGTTGAGAATAGGGGTACGGAAGAAGGCAGAGATGAAGATGCTGCAAAGAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTTAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGACACTCATGAGTTTGCAATGAAGCTGTACGGAGAAGCGATGGAAGATACGGTAGCAAGCAATGATGCTCAAGAACTTTTTGGAATTGCTGCTGATAAATTTCAAGAGATGGCTGCCTTGGCACTGTTTAATTGGGGAAGTGTTCAGATGTCCAGGGCAAGGAACCAAGGTTTCTTTTCGGAGGATGGGGCTAGAGAATCTTCCTTGGAGCATATAAAAGCTGCATATGAGTTGGCACGAAAGGAGTACGAGAAAGCAGAATTGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTACGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAAGGACTCAAATGCTGGCTTTTCTGAGGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTCTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATGATCTTTTCAAAGATGTTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGATCTCAGATACACCTTCTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCTGTTGAAAAATTTGAACTAGCTGGAACTTCTGGAACAGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCGCTTGAAGGGTTCAAAATTGAAGAGATAGTACAGGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTCCATATTGGAGCAGTTTTAA 2280 0.4329 MGKPSGKKKGIATPATANSHAKPAKSSKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALEVSPRYSKALLKRATCYRELNRLDLALRDVNLVLSMEPNNLTALELLESLTKSTEEKGVPVDDKRVAFDTTVYHSPSPSSQKLKKKRGKKIEDKVVVEEKLGLIVEDKKVVSKPIGQEGKVVSKTIGQEGKVVSKTIEQVKELDSKTIEQVQELDSKTIEQVKELDSKTTEQEKKVVEIKPVEEEKTVTITRSVKLVFGEDIRWAQLPVNCSAKLVRDIARNRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGTTTNGNEVQRDGENQNDGVENRGTEEGRDEDAAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDTVASNDAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGFFSEDGARESSLEHIKAAYELARKEYEKAELRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYALACKDSNAGFSEEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYKEQLEKMGLDDLFKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSGTDIAFIVKNHCSNETALEGFKIEEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHSILEQF 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01997 759 Gene3D - 285 378 - -
Vian4g01997 759 SMART tpr_5 517 550 IPR019734 GO:0005515
Vian4g01997 759 SMART tpr_5 115 148 IPR019734 GO:0005515
Vian4g01997 759 SMART tpr_5 79 114 IPR019734 GO:0005515
Vian4g01997 759 SMART tpr_5 41 74 IPR019734 GO:0005515
Vian4g01997 759 SMART PB1_new 299 378 IPR000270 GO:0005515
Vian4g01997 759 MobiDBLite consensus disorder prediction 382 400 - -
Vian4g01997 759 SUPERFAMILY CAD & PB1 domains 298 387 - -
Vian4g01997 759 SUPERFAMILY TPR-like 32 156 IPR011990 GO:0005515
Vian4g01997 759 ProSiteProfiles PB1 domain profile. 299 378 IPR000270 GO:0005515
Vian4g01997 759 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Vian4g01997 759 MobiDBLite consensus disorder prediction 401 418 - -
Vian4g01997 759 MobiDBLite consensus disorder prediction 380 418 - -
Vian4g01997 759 Pfam PB1 domain 299 376 IPR000270 GO:0005515
Vian4g01997 759 PANTHER PROTEIN CLMP1 1 757 IPR044517 -
Vian4g01997 759 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Vian4g01997 759 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Vian4g01997 759 MobiDBLite consensus disorder prediction 1 28 - -
Vian4g01997 759 SUPERFAMILY TPR-like 488 650 IPR011990 GO:0005515
Vian4g01997 759 CDD PB1 302 375 - -
Vian4g01997 759 Coils Coil 519 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01997 Vian-Chr4 36620907 36623271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01997 25 148 Calmodulin-binding Proteins AT3G25230 31.579 6.05e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01997 K26538 - gmx:100805760 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00450 7 11495635 11497989 Vian4g01997 4 36620907 36623271 PCT