Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01982 ATGGCGCAAGATATTGGTACTCCACCAGTTCCTTTTGATTTTGAACTCTTGGTTGGTGATCCTGAGAACCTTAGAACTGTCAAAGCCTCATCCAGCAGCACGGACCCATGGATTGAACCTGAAAGGTTAAAACTTAGACACAGGATTGGTCGGGGACCCTTTGGCGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTATGATGAGTATCATGAAGTTGCTGCAAAGATGCTACCCCCTATCAGAGAGGAACATATGAAGACTGCATTAGAGAAATTTTTTGAGTTATATTTTCAGTGCCAAGGAGCGGCTAGGGTGTTTTGGCTACTTGGGATTTCAATTTTAAATGGAAGGATATGCATCATTATGAATTTTTATGAGGGATCGGTTGGTGATAAGATGGCTAGACTCAGAGAGGGAAGGATTTCATTGCCTGATGTTCTTAGGTATGGTATCGATCTGGCTCAAGGTATTCTTGAACTTCACTCAAAAGGGATCCTAGTTCTCAACCTTAAACCATCCAACGTGCTTCTCAAAGATACTGATCAAGCAATACTGGGAGATGTTGGTATTCCAAATATTCTCTTTGGTTCCTCATTCCTAAGCTCAGATACTGCCAATAGGCTTGGTACTCCAAATTACATGGCTCCAGAACAATGGCAACCAGAAGTCAGAGGCCCTGTATCCTTTGAAACAGATTCATGGGGGTTTGGGTGTACTATTGTGGAAATGTTGGTTGGTAACCAACCTTGGTATGGGTGTCCTGTTGGTGAAGTATATCGATCAGTTGTTGAAAAGTATGAAAAACCCCAGATTCCTGGTGGCCTTCCTTCTTCAGTTGAAAATGTCCTCAGTGGCTGCTTTGAATATGACTTGAGGAATCGCCCTTCAATGGTAGATATTCTGTCTGTCTTTAGAAGCGCACGGAATGCAATGGTCAACGATGGAGGATGGAGATATCTTGGAATTCACAAAACATTAGAAAAATCAAGTAGCACGGGCTACACACAGTGGTCCCTCTCAAAGGATCATCTTCAGGTGGGCGATACCGTGCGCTCTAGAAAGCCTTCCAATTCATGCAATCCACAGAACATGGAGGTCCCAGAAGGAAATGTTGTCGGCAATGCAGATCATGGATTTGTTTTAGTGAGGCTCCATGGAGTTCATGACCCTGTAAGGATTCATGCGTCAACTCTTGAACGTGTCACCAATGGTTTAGGAGCCGGGGATTGGGTGCGCATTAAGGAAGAAGATGATAAACACTCGCCAGTGGGTATTCTTCATTCTATCAATCGTGAGGGCAGAGTGACTGTTGGATTTATAGGCCTACGAACTCTTTGGAAAGGAAACTGTTCAGAACTTGAAATGGCAGAGTCTTACTGTGTGGGGCAATTTATCAGGCTGAAACCCAATGTTCTAAGTCCCCGGTTTGAATGGTTGCGTAGAAGGGGAGGTACCTGGGCTACTGCTAAGATTTCTTGGATCCTACCAAATGGATGTCTGGTTGTCAAGTTCCCAGGCATGTTGAACATCTGGAATGCACCAAACACTTATTTGGCTGATCCCTCTGAGGTTGATGTGGTTAGTTTTAAGAATTGTCCAAATATGATAGAAAAGTATCAACATGTTGAGGATCACCACTGGGCAATTAGACCTGTTCTAATTGCATTTGGCCTTCTTAGCACTGTTAAACTAGGGATGTCAATTGGAAAAAAAATTGGCAGGAACATGAATGTGAATGCAATGGAGAATGAAAATCATTATACTGATAGCCAGAATGCTAGCAGCCCTACATCTACATGGAAATCTTCAGTAGCTAACATCCTTTTCAGAGAAGGTAGTTAA 1851 0.4295 MAQDIGTPPVPFDFELLVGDPENLRTVKASSSSTDPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTALEKFFELYFQCQGAARVFWLLGISILNGRICIIMNFYEGSVGDKMARLREGRISLPDVLRYGIDLAQGILELHSKGILVLNLKPSNVLLKDTDQAILGDVGIPNILFGSSFLSSDTANRLGTPNYMAPEQWQPEVRGPVSFETDSWGFGCTIVEMLVGNQPWYGCPVGEVYRSVVEKYEKPQIPGGLPSSVENVLSGCFEYDLRNRPSMVDILSVFRSARNAMVNDGGWRYLGIHKTLEKSSSTGYTQWSLSKDHLQVGDTVRSRKPSNSCNPQNMEVPEGNVVGNADHGFVLVRLHGVHDPVRIHASTLERVTNGLGAGDWVRIKEEDDKHSPVGILHSINREGRVTVGFIGLRTLWKGNCSELEMAESYCVGQFIRLKPNVLSPRFEWLRRRGGTWATAKISWILPNGCLVVKFPGMLNIWNAPNTYLADPSEVDVVSFKNCPNMIEKYQHVEDHHWAIRPVLIAFGLLSTVKLGMSIGKKIGRNMNVNAMENENHYTDSQNASSPTSTWKSSVANILFREGS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01982 616 Gene3D Phosphorylase Kinase; domain 1 20 128 - -
Vian4g01982 616 Gene3D Transferase(Phosphotransferase) domain 1 129 344 - -
Vian4g01982 616 SUPERFAMILY Protein kinase-like (PK-like) 40 309 IPR011009 -
Vian4g01982 616 Pfam Protein tyrosine and serine/threonine kinase 43 305 IPR001245 GO:0004672|GO:0006468
Vian4g01982 616 PANTHER OS06G0639500 PROTEIN 7 615 - -
Vian4g01982 616 ProSiteProfiles Protein kinase domain profile. 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01982 Vian-Chr4 36438328 36441275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01982 27 308 MAP Kinase Kinase Kinase AT2G17700 24.476 3.06e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vian4g01982 PK_Tyr_Ser-Thr 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01982 - - gmx:100780636 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01982 4 36438328 36441275 Vian4g01982 4 36438328 36441275 ECH
Vian4g01982 4 36438328 36441275 Vian7g00429 7 11163074 11166356 ECH
Vian7g00429 7 11163074 11166356 Vian4g01982 4 36438328 36441275 PCT