Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01978 ATGGAACTTCAGTTAGGTCTTGCTCTCCCCACTCACAACTCTGCCGAGGAATTCAAGCTCAGCAAGTCCAAACAAATAGTGAGTTCAGAGTTATGGAGACCCAGTTGCGGTTCTGAAAGTGGAAAGCATGTCAAACACAAGCGCAACTTTGAAGAGTCCTTTGAACGTTTTCTGAAACCTTTCCCTTTACTAGTATGGAGTGGGCAGCCAAATGAAGAAGATGACCGTAGTCAAAAAGTGCGAAGAAACATTCACACACCCAACGAGAACCGTAGTGAAGAAAGCCATTTGGTGGGGTGGCCACCAGTTAAGTCATGGAGGAGGAAAGAACTTCATCAGCATCATCCTGCAAGAGGCCAAATCAGGAACGATAGGATTCAAGCTAACGGGAATCAAAGTAGAGGACCAAACTCTTTATATGTCAAAGTTAACATGGAAGGGGTAACCATAGGAAGGAAAATCAATTTGAGGCTTTTCAACTCGTATAAAACACTTACAAACGCCTTGATCAACATGTTTGCTAAATACCAAAAATCGGAGGAGGCTGGAGAAAGTTACACACTCACCTTTCGAAACGAGCAAGGAGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCATTTATTGATACAGTGCGGCGTTTGGTGCTACTGAAGAATGGAAGTGAAACTATTTGA 678 0.4336 MELQLGLALPTHNSAEEFKLSKSKQIVSSELWRPSCGSESGKHVKHKRNFEESFERFLKPFPLLVWSGQPNEEDDRSQKVRRNIHTPNENRSEESHLVGWPPVKSWRRKELHQHHPARGQIRNDRIQANGNQSRGPNSLYVKVNMEGVTIGRKINLRLFNSYKTLTNALINMFAKYQKSEEAGESYTLTFRNEQGDWLQVGHVPWQSFIDTVRRLVLLKNGSETI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01978 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 220 IPR003311 GO:0005634|GO:0006355
Vian4g01978 225 MobiDBLite consensus disorder prediction 124 138 - -
Vian4g01978 225 Pfam AUX/IAA family 2 223 IPR033389 -
Vian4g01978 225 SUPERFAMILY CAD & PB1 domains 133 215 - -
Vian4g01978 225 ProSiteProfiles PB1 domain profile. 138 225 IPR000270 GO:0005515
Vian4g01978 225 Gene3D - 134 224 - -
Vian4g01978 225 MobiDBLite consensus disorder prediction 108 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01978 Vian-Chr4 36417362 36418593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01978 141 217 B3 DNA Binding Superfamily AT3G61830 29.870 6.03e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian4g01978 AUX_IAA 4.5e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01978 K14484 - gmx:100783359 389.808