Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01969 ATGGAAACATGTGAAAACTTGAGGAAGATTGTTGGAACAAGATTGTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACGAGAATGATAGGAAACCGACCCTCAAACCCAAAGTGGAACCAGGACTTCGAAATCTACTGTGCACATCGTATCTCAAACATCATATTCACTGTCAAAGATGGCAATCCAATCGGAGCAACTCTAATCGGAAGAGCCTATGTCCCTGTGGATCAAGTTCGTAAGCGCCCCATAGTTAAGAGATGGGTTGAGATATTAGACGAAGAAGATCGTCGTCCCGTGCCGGGTCATTCCAGAATCTGCGTCAGCGTGAAATTCACCAGCGTCACTCAGGACCCAACATGTTCATGGTCTCAGGGAATTCGCATGCCATTTTCTGGAGTTCCTCGTACATTCTTCAATCAGAGAGAAGGTTGTCATGTTACTTTGTACCAGGATGCTCATGCCCCACGTGGCGTTGGTGTTGTCCCATACATTCCAATATCCGAAGGAAAAGACTACTTGCCCGCAAGATGTTGGGAGGACATTTACACTGCCATTATGGATGCTAAGCATCTTGTTTACATAACTGGTTGGTCTGTTTACACTGAAATAGCATTGGTTAGAGACAAAGAGGAATCAAATATCACCCTCGGGGAGTTACTTAAGAAGAAGGCTGATGAAGGTGTTCGAGTTCTTCTGCTTGTTTGGAAAGACAGAACTTCTGTACCAGAATTGACCAAAGATGGCTTGATGGGAACTCATGATGAGGAAACTGCTGCTTATTTTAGAAACACAAAGGTGCATTGTTTTCTGTGTCCACGGAACCCGGACGATGGGAAAAGCATGATTCAAGGATTTCAAACATCAACTATGTTCACTCATCACCAAAAGAGTGTGGTCGTTGATGCAGGTTTTGTAGGGTCATCACAGAAGCGAAGTGTGGTGAGTTTCATAGGTGGCCTTGATCTTTGTGACGGGAGGTATGACACCAGGGACCATCCTCTATTTTCAACTTTGAATACGGTGCATAGAAACGATTTCCATCAACCAAACTTTCCAACTGCTTCCATTGATAAAGGTGGTCCAAGAGAGCCATGGCACGACATTCATTGCAAGCTAGAAGGCCCTATTGCTTGGGATGTTCTGTACAACTTTGAGCAAAGGTGGGAGAAGCAAGTTGGGAAGGAACTGCTATTCTCGCTTGATGATCTTGATGACATTCTAGTCCACCCTTCTGTCGCACAAAAATCAGAAGTGGGAGAAGAAGACACATGGAATGTTCAGCTGTTTAGATCCATAGATGGTGGTGCTGCTTTGGACTTTCCCCAAGCCCCGAAAGAAGTTGCTGCATTAGGCCTTGTTAGTGGGAAAGACAATATGATTGAGAGAAGTATTCAGGATGCCTACATTAATGCTATTAGGCGTGCAAAAAACTTCGTCTACATTGAGAATCAATACTTCTTAGGGAGTTCTTATGCTTGGCACTCAACTAATGACTTTGTGATTGAGAACATTGGTGCTTTGCATCTTATACCAAAGGAGTTGACATTGAAGATTGTGAGCAAGATTGAAGCAAAAGAGAGGTTTTCTGTGTACATAGTGATCCCAATGTGGCCTGAAGGTGTACCTGAAACTGAGTCGGTTCAAGCAATATTAGATTGGCAGAGAAGAACCATGGAGATGATGTATTCCGACATTGCTGATGCCTTAGCAAAAGTCGGCATTCAAGCACACCCTCGAGATTATTTGGCATTTTTTTGCCTTGGCAATAGGGAGCATAAGGAACCGGGAGAGTATACTCCTCCACAGGAACCAGAGCCTGAGAGTGACTACAGAAGAGCACAAAATTCTAGGAGGTTCATGATCTATGTCCATTCCAAAATGATGATAGTTGACGACGAATATATAATCGTTGGGTCTGCTAACATAAATCAAAGATCAATGGAGGGTTCAAGAGACAGTGAGATTGCAATGGGTGCATTCCAACCACGTCATCTAGCATGGAATGGAAGACCCAGAGGGGAGATATATAGATTCCGACGTGCACTATGGTATGAGCACCTTGGGGACCATGGTTTTGACTCAAAAATCTTCGACAACCCAGAACATTTGGACTGCATAGATCTTGTGAATAGGCTTGCCGAGGAAAACTGGGACATGTACTCAAAGGAAACATTTGATCAAGTTAGAAATTTTCACCACCTCATGCGCTACCCTATACATGTAGCCCACGATGGAACCATAACAACTCTTCCAGGGTTTGAATATTTTCCTGACACCAAAGCTCGGATTTTGGGTTCCTATTCATATTTCCTTCCTTCAATTCTTACCACCTAA 2343 0.4362 METCENLRKIVGTRLYATVDLDKARVGRTRMIGNRPSNPKWNQDFEIYCAHRISNIIFTVKDGNPIGATLIGRAYVPVDQVRKRPIVKRWVEILDEEDRRPVPGHSRICVSVKFTSVTQDPTCSWSQGIRMPFSGVPRTFFNQREGCHVTLYQDAHAPRGVGVVPYIPISEGKDYLPARCWEDIYTAIMDAKHLVYITGWSVYTEIALVRDKEESNITLGELLKKKADEGVRVLLLVWKDRTSVPELTKDGLMGTHDEETAAYFRNTKVHCFLCPRNPDDGKSMIQGFQTSTMFTHHQKSVVVDAGFVGSSQKRSVVSFIGGLDLCDGRYDTRDHPLFSTLNTVHRNDFHQPNFPTASIDKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKELLFSLDDLDDILVHPSVAQKSEVGEEDTWNVQLFRSIDGGAALDFPQAPKEVAALGLVSGKDNMIERSIQDAYINAIRRAKNFVYIENQYFLGSSYAWHSTNDFVIENIGALHLIPKELTLKIVSKIEAKERFSVYIVIPMWPEGVPETESVQAILDWQRRTMEMMYSDIADALAKVGIQAHPRDYLAFFCLGNREHKEPGEYTPPQEPEPESDYRRAQNSRRFMIYVHSKMMIVDDEYIIVGSANINQRSMEGSRDSEIAMGAFQPRHLAWNGRPRGEIYRFRRALWYEHLGDHGFDSKIFDNPEHLDCIDLVNRLAEENWDMYSKETFDQVRNFHHLMRYPIHVAHDGTITTLPGFEYFPDTKARILGSYSYFLPSILTT 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01969 780 SMART pld_4 622 649 IPR001736 GO:0003824
Vian4g01969 780 SMART pld_4 292 329 IPR001736 GO:0003824
Vian4g01969 780 FunFam Phospholipase D 434 668 - -
Vian4g01969 780 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 622 649 IPR001736 GO:0003824
Vian4g01969 780 PANTHER PHOSPHOLIPASE D 11 769 IPR015679 -
Vian4g01969 780 Pfam Phospholipase D C terminal 698 769 IPR024632 -
Vian4g01969 780 PIRSF PLD_plant 1 780 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vian4g01969 780 Gene3D C2 domain 9 114 IPR035892 -
Vian4g01969 780 Gene3D Endonuclease Chain A 171 410 - -
Vian4g01969 780 FunFam Phospholipase D delta 171 409 - -
Vian4g01969 780 SUPERFAMILY Phospholipase D/nuclease 132 402 - -
Vian4g01969 780 SMART C2_3c 1 90 IPR000008 -
Vian4g01969 780 SUPERFAMILY Phospholipase D/nuclease 467 691 - -
Vian4g01969 780 Gene3D Endonuclease Chain A 443 664 - -
Vian4g01969 780 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 292 329 IPR001736 GO:0003824
Vian4g01969 780 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 116 IPR035892 -
Vian4g01969 780 Pfam C2 domain 13 92 IPR000008 -
Vian4g01969 780 Pfam Phospholipase D Active site motif 292 329 IPR001736 GO:0003824
Vian4g01969 780 Pfam Phospholipase D Active site motif 623 649 IPR001736 GO:0003824
Vian4g01969 780 ProSiteProfiles C2 domain profile. 1 91 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01969 Vian-Chr4 36346455 36348902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01969 13 780 Phospholipase D Gene Family (Wang group) AT3G15730 64.516 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01969 K01115 - gmx:100794115 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01969 4 36346455 36348902 Vian9g00102 9 804357 807864 ECH
Vian4g01969 4 36346455 36348902 Vian11g00092 11 789961 790473 ECH
Vian4g01969 4 36346455 36348902 Vian4g01968 4 36331459 36334585 ECH
Vian4g01969 4 36346455 36348902 Vian4g01969 4 36346455 36348902 ECH