Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01968 ATGTCGCGTTTGCTGCATGGGACTCTCAATGTGACCATATACGAGGTTGATACACTGCCAACTCTTAACGACTGCGATTTCAATCTCTGCTGCAAGGGCCAGCCCGGGTCTACCCAAACGGGTCTGTATGCAACAATTGATTTAGATAAGGCGAGAGTTGGAAGGACTAAAGTGATAAATGATGAACCCTCTAACCCCAGGTGGAATGAGACCTTTCGCATATACTGTGCCCATTTGATCTCCCATGTTATATTCACTGTCAAACAAAAAGACCCCATTGATGCAACTCTAATTGGAAGAGCTTATGTCCCAGTTGAGCAAGTCGTGAACGGTAACATAGTGGACACATGGGTCCCAATACTAGACGAGGATCGTAACCCCATTCCAAGTGACTCTAAAATCCATGTCACAATGAAATTCTCTAATGTTTTGAATGACATAAACTGGACTGGAGGAATAAGAATTCCGAGTTTTCAAGGAGTTCCCCACACTTTCTTCGGTCAAAGAACTGGTTGCAACGTTACTTTGTACCAAGATGTCCATGTTTCGGATGGTTTTCAGCCGTTGATTCCCTTGTCGGGAAGAAGGAATTATGAGTTTAGGAAATGCTGGGAGGATATTTACAGTGCCATTGTGGAGGCTAGGTACTTTATTTATATAACTGGCTGGTCTGTGTACACTGAAATAACCTTGATTAGGAACCCCATGCAGCCCAAGAGAATCACCCTTGGGGAACTTCTCAAGAGGAAAGCTGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGATAGAACATCTGTGCCAGACTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGCTTACTTCAAAGACACAAAGGTGAATTGTGTTTTGTGTCCGCGGAACCCAGATGTTGGAAGAAGCATTGTGCAAGGTTTGGAAACTTCAACAATGTTCACTCATCACCAGAAGAGTGTAGTTGTTGATAGCCAATTTGTTGGTGCTGCGGTGGGACAACGACAAAAGAGAACGATAACAAGTTTTGTAGGTGGCATTGATCTTTGCGATGGGAGATACGATACTCAGGAACATCCTCTATTTTCAACTTTGGACACAGTGCATAAAGATGACTTCCATCAGCCAAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGATATTCACTGCAAGTTAGAAGGGAGTGTTGCTTGGGATGTTTTGTTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGTTCCTATTCCCTTCGAGCATGCTTAACGAATACTTTGTCCCTCGATCCACTGCGGCAACGACAAATGATAATGACACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCTCCCCAGACCCAAAAGTTGCAGCTGAATCCGGCCTTGTTAGTGTGAACAACAACATCATTGATAGAAGTATTCAAGATGCATATATAAATGCTATTCGAAGAGCCCAAAACTTCATCTACATTGAAAACCAATATTTCCTTGGGAGTTCATATGCCTGGCAAGCATCTGATATAGTAGTTGAGGATATTGGTGCATTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGATTTTCTGTGTATGTTGTCATACCAATGTGGCCAGAAGGCATACCTGAGAGTGATTCAGTTCAAGCAATACTAGACTGGCAAAGGAGGACAATGGAGATGATGTATGCTGATATAGCTCAAGCCATTCAAAGAACTGGAATTGAAGCTCACCCAAGAGACTACTTGACCTTTTTCTGCCTTGGAAACCGTGAGGGTCAGAAATATAGCGAGTACACTCCTACTGAGGCACCAGAACCGGACACTGATTACAGCAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCGAACATAAACCAAAGATCAATGGATGGAGGAAGAGACAGTGAGATCGCGATGGGTGCATTCCAGCCACGGCATTTAGCGTGTAATGGGCCACCCAGAGGACAGATATATGGATTTCGACGTGCACTGTGGTATGAACACCTCGGAGATGTTAATGATAGTAGCATTTTCGACGATCCTGAAAGCGAAGAATGCACGAAGCTTGTGAATCATCTTGCTGAAACCAACTGGGCTCTGTACTCTGAGCAAACTTTTTATGAGAATACAGAATTTCACCACCTCATGCGTTATCCCATAGAAGTAACCAACCATGGAGCCATAACGAACCTTCCAGGGCTTCAATATTTTCCTGACACTAAGGCTCGGATTTTGGGTGCCAAATCAGAGTATCTTCCTCCAATTCTCACCACTTAG 2415 0.4352 MSRLLHGTLNVTIYEVDTLPTLNDCDFNLCCKGQPGSTQTGLYATIDLDKARVGRTKVINDEPSNPRWNETFRIYCAHLISHVIFTVKQKDPIDATLIGRAYVPVEQVVNGNIVDTWVPILDEDRNPIPSDSKIHVTMKFSNVLNDINWTGGIRIPSFQGVPHTFFGQRTGCNVTLYQDVHVSDGFQPLIPLSGRRNYEFRKCWEDIYSAIVEARYFIYITGWSVYTEITLIRNPMQPKRITLGELLKRKAEEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETAAYFKDTKVNCVLCPRNPDVGRSIVQGLETSTMFTHHQKSVVVDSQFVGAAVGQRQKRTITSFVGGIDLCDGRYDTQEHPLFSTLDTVHKDDFHQPNFPGASIKKGGPREPWHDIHCKLEGSVAWDVLFNFQQRWEKQVGNQFLFPSSMLNEYFVPRSTAATTNDNDTWNVQLFRSIDGGAASGFSPDPKVAAESGLVSVNNNIIDRSIQDAYINAIRRAQNFIYIENQYFLGSSYAWQASDIVVEDIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESDSVQAILDWQRRTMEMMYADIAQAIQRTGIEAHPRDYLTFFCLGNREGQKYSEYTPTEAPEPDTDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPRHLACNGPPRGQIYGFRRALWYEHLGDVNDSSIFDDPESEECTKLVNHLAETNWALYSEQTFYENTEFHHLMRYPIEVTNHGAITNLPGLQYFPDTKARILGAKSEYLPPILTT 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01968 804 Gene3D Endonuclease Chain A 193 450 - -
Vian4g01968 804 FunFam Phospholipase D 460 693 - -
Vian4g01968 804 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 142 IPR035892 -
Vian4g01968 804 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 647 674 IPR001736 GO:0003824
Vian4g01968 804 Pfam Phospholipase D Active site motif 648 674 IPR001736 GO:0003824
Vian4g01968 804 Pfam Phospholipase D Active site motif 316 357 IPR001736 GO:0003824
Vian4g01968 804 CDD C2_plant_PLD 1 140 - -
Vian4g01968 804 SMART pld_4 647 674 IPR001736 GO:0003824
Vian4g01968 804 SMART pld_4 316 357 IPR001736 GO:0003824
Vian4g01968 804 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 316 357 IPR001736 GO:0003824
Vian4g01968 804 Gene3D Endonuclease Chain A 466 689 - -
Vian4g01968 804 PIRSF PLD_plant 1 804 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vian4g01968 804 FunFam Phospholipase D delta 194 436 - -
Vian4g01968 804 Gene3D C2 domain 4 148 IPR035892 -
Vian4g01968 804 Pfam Phospholipase D C terminal 723 794 IPR024632 -
Vian4g01968 804 SMART C2_3c 8 117 IPR000008 -
Vian4g01968 804 ProSiteProfiles C2 domain profile. 1 118 IPR000008 -
Vian4g01968 804 Pfam C2 domain 7 120 IPR000008 -
Vian4g01968 804 SUPERFAMILY Phospholipase D/nuclease 490 719 - -
Vian4g01968 804 SUPERFAMILY Phospholipase D/nuclease 146 426 - -
Vian4g01968 804 PANTHER PHOSPHOLIPASE D 4 792 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01968 Vian-Chr4 36331459 36334585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01968 4 804 Phospholipase D Gene Family (Wang group) AT3G15730 64.242 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01968 K01115 - gmx:100791688 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01968 4 36331459 36334585 Vian4g01968 4 36331459 36334585 ECH
Vian4g01969 4 36346455 36348902 Vian4g01968 4 36331459 36334585 ECH