Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01967 ATGGTACAAGCCAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCATCCTTTACTGAAGAGAAGGGTCTGGCTAGGCACGTTTGAGACAGCTGAGGCTGCTGCAAGGGCTTATGATCAAGCAGCCATTTTGATGAATGGCCAGAATGCCAAGACTAACTTCCCCAAGAACCAGGCTCAGCCTGATGCCACCACTTCCACCACCCCTTCTGCTGCTTCTGCTTCTGCTTCTGATCATGACAACGCTTTCTTATCTCCCAAAGCTCTTTCAGAACTCCTCAGCACTAAGCTCAGAAAGTACTGCAAAGACCCTGCTCCTTCTCTCACTTGTCTCAGGCTCGATGCTGATAACTCCCACATTGGAGTCTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAATTGGGTCATGAGGGTGGAGCTTGGGAAGAAGCAGACACAGAGTGAATCAGCATGGTCGCCCAGCAGTAGTGCTAATGACACTGCTGGAAACAATGGAGTAGTAGTAGTAGAAGAGGAGGAGGAGGAGGATAGACTCGCTTTGCAGATGATCGAGGAGCTACTCAATTGGAACTAG 600 0.5083 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPKNQAQPDATTSTTPSAASASASDHDNAFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQTQSESAWSPSSSANDTAGNNGVVVVEEEEEEDRLALQMIEELLNWN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01967 199 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vian4g01967 199 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vian4g01967 199 MobiDBLite consensus disorder prediction 60 87 - -
Vian4g01967 199 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vian4g01967 199 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vian4g01967 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 163 - -
Vian4g01967 199 MobiDBLite consensus disorder prediction 153 172 - -
Vian4g01967 199 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Vian4g01967 199 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Vian4g01967 199 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vian4g01967 199 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vian4g01967 199 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01967 Vian-Chr4 36314812 36315504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01967 1 198 AP2-EREBP Transcription Factor Family AT5G25390 58.586 4.93e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian4g01967 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01967 - - gmx:100806821 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01967 4 36314812 36315504 Vian4g01967 4 36314812 36315504 ECH
Vian1g00980 1 10313999 10314808 Vian4g01967 4 36314812 36315504 ECH