Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01963 ATGGATGTGATTTGCCAAGCGAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCGACTCTGCAGCAGATTGATCCCGTTCCTGGCCAAGTTTCTGCTCTTGTTCTGTGCCATACTAGAGAATTAGCATACCAGATATGCCATGAGTTTGAGAGGTTCAGTACCTATTTACCCGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTAGCATTGACTAGGGATAAGGATCTTTCTTTGAAGAATGTGAGACATTTCATATTAGACGAATGTGACAAGATGCTGGAATCACTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCCGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCGAAGTTGACACTTCACGGACTTGTGCAGCACTACATCAAACTGAAAGAAGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTTATCTTTGTTAAAAGTGTTAGTAGAGCAGCCGAGCTGGACAAACTACTCGTGGAGTGCAACTTTCCTTCTATATGCATCCACTCTGGCATGTCCCAGGAAGAAAGTGGTCTTTCCTTCTTTACTTCCCTTGATCTCATTCCCGTACCAAGCTTCTTGTTTGTGCCTTTGGCTCAGCCTCTTCCCATGACCCTCTTGTTAAAGCGTTATAAAGGTTTCAAAGAAGGGCATACAAGAATTCTTGTCGCAACGGATTTGGTTGGAAGAGGGATTGACATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCAGACACGTACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCCTGTTCTACCGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGATATAAAACAGCTGCCAGAGCAGATTGATACCTCAACTTATATGCCGTCCTAG 1125 0.4231 MDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEESGLSFFTSLDLIPVPSFLFVPLAQPLPMTLLLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01963 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Vian4g01963 374 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 179 370 IPR001650 -
Vian4g01963 374 CDD DEADc_DDX39 1 169 - -
Vian4g01963 374 Gene3D - 1 175 IPR027417 -
Vian4g01963 374 FunFam DEAD-box ATP-dependent RNA helicase 56-like 1 169 - -
Vian4g01963 374 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Vian4g01963 374 Gene3D - 176 373 IPR027417 -
Vian4g01963 374 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 348 - -
Vian4g01963 374 SMART ultradead3 1 183 IPR014001 -
Vian4g01963 374 SMART helicmild6 219 330 IPR001650 -
Vian4g01963 374 Pfam Helicase conserved C-terminal domain 193 330 IPR001650 -
Vian4g01963 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 341 IPR027417 -
Vian4g01963 374 CDD SF2_C_DEAD 180 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01963 Vian-Chr4 36275184 36280163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01963 1 374 Eukaryotic Initiation Factors Gene Family AT5G11170 84.492 0.0 645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01963 4 36275184 36280163 Vian4g01963 4 36275184 36280163 ECH