Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01958 ATGAGTGCGGCGTTTCAGTGTTTATCGTGTGCGCGGACTGAACCTTTCCTCCTCAGACCAGCCCAATCCCTCACTCTCCCTTTCCAACGAAAACCATTTTTCTGCTCTCTTCCTCTTTCCTCTCGCGCTCGTAACCTCTCTTCTTCAATCGTCGCTGCTTCTTCCAAAAAGAAAAAAAACAAGAAAAAACTGTCTCGTCATCATGTTACCGAGGGCGGCGAGGAGGACATGGACGCGTTTGAGCTTCTCTTCAACCAACTCGAACAAGATCTCAAACGCGGTGATTTGTCAGATGATGATGGCGAAGATGGGATAACGGAAGAAGAGATGGCATTGCTTGAACGTGAGCTGGAAAATGCCTTGGGGGACTTCGATGCTGAATTGTTGAACTCGGATGTAATCGACGTAGAACTTGGTAGTGGTCCAGAGAATGATGACGAGGATGGTGATGGTGATGATGCTGAGAATCAGGATGGAGATGAAAACCCAGTGAACCTTAAGAATTGGCAGATGAAGAAATTGGCCAGAGCTTTGAAAGCCGGCCGCCGCAAAACAAGTATAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAGTTACTTCGTGAACCTCCTCCAAATCTCTTAATGATGAGTCTTACTATACCTGATGAACCTGCAACGACAGTAGTATCACTTGAAACTAAGCCCAGTGAGATTCTCCTTCAAGAAACAAGTATTGATCAAGTTGAATCTGAACCCGAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGTATGCTCAAAAGCGATTGAAGAAGGTCCATGTTGACACTCTGGAGAGAGTTTATAGGAAATCAAAACGACCTACTAATGCAATGATCAGCAGCATTGTACATGTAACAAACATTCCTCGAAAAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCATCGTCTTCCTTACCAGCGCTATGTTCCTGAGACGGCTTGA 1008 0.4494 MSAAFQCLSCARTEPFLLRPAQSLTLPFQRKPFFCSLPLSSRARNLSSSIVAASSKKKKNKKKLSRHHVTEGGEEDMDAFELLFNQLEQDLKRGDLSDDDGEDGITEEEMALLERELENALGDFDAELLNSDVIDVELGSGPENDDEDGDGDDAENQDGDENPVNLKNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLREPPPNLLMMSLTIPDEPATTVVSLETKPSEILLQETSIDQVESEPEAKVPVHTLQRNWYAQKRLKKVHVDTLERVYRKSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDHRLPYQRYVPETA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01958 335 CDD homeodomain 267 316 IPR001356 GO:0003677
Vian4g01958 335 Gene3D - 261 319 - -
Vian4g01958 335 MobiDBLite consensus disorder prediction 139 159 - -
Vian4g01958 335 ProSiteProfiles 'Homeobox' domain profile. 261 321 IPR001356 GO:0003677
Vian4g01958 335 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 19 328 - -
Vian4g01958 335 SUPERFAMILY Homeodomain-like 263 324 IPR009057 -
Vian4g01958 335 Pfam Homeodomain 270 317 IPR001356 GO:0003677
Vian4g01958 335 SMART HOX_1 267 325 IPR001356 GO:0003677
Vian4g01958 335 MobiDBLite consensus disorder prediction 136 165 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vian4g01958 Homeodomain 7.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01958 - - gmx:100798718 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01958 4 36206506 36213613 Vian4g01958 4 36206506 36213613 ECH