Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01936 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGCTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCTAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAACAACAGCAACCACAATCCCAGCAGTCACAGCATCAACAACAGCAGCAACAACATATGCAGATGCAACATCTCCTCTTGCAGAGAGCACAACAACAACAGCAGCAGCAACAACAACAACAACAGCAATCACAACAACAACAGCCTCAACCACAACAACAACAAAGCAGGGATAGGGCTCACCTTTTAAATGGTAGTTCAAATGGATTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTAGATGATGCAGCACTGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAATCATGCATCGATATTGAAGTCAGCTGCAGCCCCTGGCCAACCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAGCACGTACTCAGCAATTACCTGGGTCTACTCTGGATATAAAAGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAGAGGGTGGCCACTCACTGGTTTGGAGCAACTGCGCAATGGGCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCGCAGCCTTTTCATCAAATCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAATTTGGCGTCACCATCTGCCACTGAAGAAAGTAGAAGACTAAGAATGCTTTTGAATAATAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGGTGAAACTGGCTCAGCTACAGCAGCAACATCAACAACAATCAAGTACCAATGCACAGCAGCAGCAGCAGCTTCAACAACACGCTCTTTCAAACCAGCAATCCCAGACTTCTAATCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTGGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAGCCAAATTGGGAGAAAGAGAAAGCAGCCTGGATCATCGTCAGGTCCTGCTAATAGTACAGGCACAGCAAATACGACAGGTCCGTCACCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGATGTGATATCGATGCCTGCCTTGCCCAATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTACTGGAGCCCTTACATCACCTTCTAACCAGTTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCACTAGATGAAAATGTTGAGTCTTTTTTGTCCCAGGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTACTGATGTAAGTTCTGTACGGGCAAGCACAAGTAAAGTTGCCTGTTGCCATTTCTCATCTGATGGGAAATTACTTGCAAGTGGTGGGCATGACAAAAAGGCTGTTTTATGGTACACGGATTCTCTTAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTTCGGTTCAGTCCAAGCATGCCTCGTCTTGCTACTTCTTCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCTCTACGCACCTTCACGGGACATTCTTCAACTGTTATGTCACTAGATTTTCATCCAAATAAGGATGACCTCATCTGCTCATGCGACGGCGATGGTGAGATACGATACTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTGGAAGGGTGGCACCACCCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGTGTGTCGATATTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGTTGGGATCCTTCTGGGGAGTTGCTAGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGTCTCTTGGATCCGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAGCAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTGGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCTTTGGCTGTTTCAACTGTAAATGGTTTGATTGCTTCTACCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2676 0.4559 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQSQQSQHQQQQQQHMQMQHLLLQRAQQQQQQQQQQQQQSQQQQPQPQQQQSRDRAHLLNGSSNGLVGNPGTANALATKMYEERLKLPLQRDSLDDAALKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGSNNLTLRGWPLTGLEQLRNGLLQQQKPFMQAPQPFHQIQMLTPQHQQQLMLAQQNLASPSATEESRRLRMLLNNRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGGMSNSFRGNDQVSKSQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGTGALTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSQDDTDPRDTVGRCMDVSKGFTFTDVSSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSSTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLIASTSHDKFLKLWK 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01936 891 MobiDBLite consensus disorder prediction 402 442 - -
Vian4g01936 891 Gene3D - 741 891 IPR015943 GO:0005515
Vian4g01936 891 MobiDBLite consensus disorder prediction 402 531 - -
Vian4g01936 891 MobiDBLite consensus disorder prediction 89 167 - -
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 692 734 IPR001680 GO:0005515
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 649 684 IPR001680 GO:0005515
Vian4g01936 891 ProSitePatterns Trp-Asp (WD) repeats signature. 668 682 IPR019775 -
Vian4g01936 891 SUPERFAMILY WD40 repeat-like 605 891 IPR036322 GO:0005515
Vian4g01936 891 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 891 - -
Vian4g01936 891 MobiDBLite consensus disorder prediction 454 513 - -
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 774 814 IPR001680 GO:0005515
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 648 IPR001680 GO:0005515
Vian4g01936 891 Coils Coil 114 139 - -
Vian4g01936 891 Pfam LisH 10 36 IPR006594 GO:0005515
Vian4g01936 891 SMART Lish 8 40 IPR006594 GO:0005515
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 692 730 - -
Vian4g01936 891 Pfam WD domain, G-beta repeat 688 725 IPR001680 GO:0005515
Vian4g01936 891 Pfam WD domain, G-beta repeat 646 681 IPR001680 GO:0005515
Vian4g01936 891 Pfam WD domain, G-beta repeat 770 805 IPR001680 GO:0005515
Vian4g01936 891 Pfam WD domain, G-beta repeat 854 891 IPR001680 GO:0005515
Vian4g01936 891 Pfam WD domain, G-beta repeat 608 638 IPR001680 GO:0005515
Vian4g01936 891 Gene3D - 583 740 IPR015943 GO:0005515
Vian4g01936 891 FunFam Transcriptional corepressor LEUNIG 735 891 - -
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 649 684 - -
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 859 891 IPR001680 GO:0005515
Vian4g01936 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 859 891 - -
Vian4g01936 891 CDD WD40 607 891 - -
Vian4g01936 891 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vian4g01936 891 Coils Coil 401 421 - -
Vian4g01936 891 SMART WD40_4 642 681 IPR001680 GO:0005515
Vian4g01936 891 SMART WD40_4 852 891 IPR001680 GO:0005515
Vian4g01936 891 SMART WD40_4 728 764 IPR001680 GO:0005515
Vian4g01936 891 SMART WD40_4 685 725 IPR001680 GO:0005515
Vian4g01936 891 SMART WD40_4 767 805 IPR001680 GO:0005515
Vian4g01936 891 SMART WD40_4 600 639 IPR001680 GO:0005515
Vian4g01936 891 SMART WD40_4 811 850 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01936 Vian-Chr4 35965527 35973271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01936 686 890 Miscellaneous Gene Families AT5G08390 23.810 7.34e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vian4g01936 WD40 0.021 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01936 - - gmx:100805628 1482.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01936 4 35965527 35973271 Vian4g01936 4 35965527 35973271 ECH
Vian7g00391 7 10502899 10518560 Vian4g01936 4 35965527 35973271 PCT