Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01930 ATGGCTGTGCTGCTGAGAATGGCTCAGCCTCACAATGGCAACACCAGCAACACTGTCAACCAGACTTTGGTCCTTCATGACTTTCTGGGCATGAAGCCCGCAGCTGATTCTCCAAAAACCACCGATGTAAGGTTGTCGGAACCGTCTGCCTCCGCCTCCTCCGCTGGTGGGCGTGGCCCTTTCTCAGCCACCTCCGACATCGCTTCTGAGAAACAGGTAGGAAACCATCTTGAGGGAGTTCCTTTCTATGGCCCGAGGAGTGATCTTTCTGGTGCTGAGATCAGTAACAGATTAGTGGGAAGCAAGAGAAGTAATTCTGATTCCGCTTTTACTGGTTCCTCCAGAGATGCCTTCCAAATGGTCCCTGATTCATATCAAAACTCACATTTGATGAAGGTTCTCCGGCATGCAGCTGGAGATAGGTCTAGAAGGCCTAATGACGAGGAAATGTTACTTGGTATGCAGTCAATGAAACAATCTTCTTCTCAGATATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAGTGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGTATCCACCCCGTGGAGGGCAATTGGCACCTTTTGTCCACCAAATGGCCTCAAGCAAGATCAGGGATACCAATGCTGGCCCTTCCTTCATTTCTCAGTCTGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAATGTTGCTGCTATGGGTGCTGAGAAAACTTCTTCTGCTGTGATGCTTGGTGGCAGCAGGGCAAAGCCTGGAAGTAATATCATAGAATCATCCACGCCTCCAAGCAGTCAACCCACCCTAACTTCTGCCAGCCGTCAGATGACTATTTTTTATGGAGGCCAAGCTCATGTTTTTGATGATGTCCATCCTCATAAGGCAGATGTTATAATGGCTTTGGCCGGGTCAAATGGCGGATCTTGGTCGACTGCCTTCTCGCCTAAATCTGCTATAAAAATGGTTAGTGATGGGAACTTGCACAGTGGAGAAAATGAAACAGGTGGAGTGAATAATGTAGCCTTCCCACAGGAGCTTCATGGGAAACTGTCTATTACTGCAAGTTCTAGCCATGCCATGGGGCCTGGTGATCGAGTAACTACTCCTGCAGGGGCACACCAAGGTAGCGTTTTTGCTAAAGATACCAGAAATCCAGTTCAACCATCAGATCCCAGTTCTGAAGACAAAAGAGGACAATGA 1242 0.4783 MAVLLRMAQPHNGNTSNTVNQTLVLHDFLGMKPAADSPKTTDVRLSEPSASASSAGGRGPFSATSDIASEKQVGNHLEGVPFYGPRSDLSGAEISNRLVGSKRSNSDSAFTGSSRDAFQMVPDSYQNSHLMKVLRHAAGDRSRRPNDEEMLLGMQSMKQSSSQIFQPPTSTKIDANKWERSILMNVGPSMQYPPRGGQLAPFVHQMASSKIRDTNAGPSFISQSAADEGSRTGIKGPGILSSINVAAMGAEKTSSAVMLGGSRAKPGSNIIESSTPPSSQPTLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAIKMVSDGNLHSGENETGGVNNVAFPQELHGKLSITASSSHAMGPGDRVTTPAGAHQGSVFAKDTRNPVQPSDPSSEDKRGQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01930 413 SMART tify_2 283 318 IPR010399 -
Vian4g01930 413 ProSiteProfiles Tify domain profile. 283 318 IPR010399 -
Vian4g01930 413 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 90 358 IPR040390 -
Vian4g01930 413 MobiDBLite consensus disorder prediction 42 64 - -
Vian4g01930 413 MobiDBLite consensus disorder prediction 368 413 - -
Vian4g01930 413 MobiDBLite consensus disorder prediction 35 64 - -
Vian4g01930 413 Pfam tify domain 285 317 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01930 Vian-Chr4 35867823 35875247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01930 18 316 Tify Gene Family AT4G32570 41.270 4.01e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian4g01930 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01930 - - gmx:100819293 699.508