Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01920 ATGCACTCCAAATCGGCGCAGTCATCGTTTAGGGATCGGACGCTTGAATTTCATAGCATTGCGGAGAGGTTGAAGAAGTCGGGATCAGCGCCGAATGGACAAAGCAGCAATTCATCGAGATTGGAGGAGCAGCGATCTGCAATTACAAATCAATCAGAGTTCAACAGAAGAGCTTCCAAGATTGGCTTCGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTTGCCAAGTTGGCTAAGAGGACCTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACGGGGGTAATTAAGCAAGATATCACTGCGTTAAACTCTGCGGTTGTGGATCTTCAATTGCTTTGCAACTCAAGGAACACGAATGGGAACGCTTCCACCGACACCACTATGCATTCAACAACGGTGGTTGATGACCTCAAGACGCGGCTGATGGGCGCCACTAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGGGCACGAGAATAGAAGACAGCTGTTTTCGGCCTCTGGTTCTAAGGATTCTGCAAATCCTTTTGTCCGGCAACGGCCGTTGGCTACCAGATCGGCTGCTAGTAGTTCTAATGCCCCTGCTCCACCATGGGCTAGTGGATCATCTTCATCTCAGTTGTTTGCTAAAAAACAGGTTGATGGGGAGAGTCAACCGTTGCTGCAACAGCAGCAACAAGAGGTAGCCCCATTGCAAGATAGCTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTTAGCAACATCTTTAATCAGCTAGCAACACTTGTTTCCCAACAGGGAGAAGTTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCTCAAGGGGCTTTATTAAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTGATATTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1005 0.4597 MHSKSAQSSFRDRTLEFHSIAERLKKSGSAPNGQSSNSSRLEEQRSAITNQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNTNGNASTDTTMHSTTVVDDLKTRLMGATKEFKDVLTMRTENLKGHENRRQLFSASGSKDSANPFVRQRPLATRSAASSSNAPAPPWASGSSSSQLFAKKQVDGESQPLLQQQQQEVAPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01920 334 PANTHER SYNTAXIN 47 326 IPR045242 -
Vian4g01920 334 CDD SNARE_syntaxin5 245 323 - -
Vian4g01920 334 SMART tSNARE_6 237 304 IPR000727 -
Vian4g01920 334 MobiDBLite consensus disorder prediction 192 235 - -
Vian4g01920 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Vian4g01920 334 Gene3D - 49 297 - -
Vian4g01920 334 MobiDBLite consensus disorder prediction 28 45 - -
Vian4g01920 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian4g01920 334 MobiDBLite consensus disorder prediction 21 45 - -
Vian4g01920 334 Pfam SNARE domain 279 330 IPR000727 -
Vian4g01920 334 SUPERFAMILY t-snare proteins 51 297 IPR010989 GO:0016020|GO:0016192
Vian4g01920 334 MobiDBLite consensus disorder prediction 190 235 - -
Vian4g01920 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01920 Vian-Chr4 35767308 35772708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01920 1 334 SNARE and Associated Proteins AT3G24350 62.568 1.20e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01920 K08490 - gmx:100777961 512.686