Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01919 ATGTACGTGAAAGCGGCACAGTCATCGTTCCGGGATCGGACGCATGAATTCCACAACATCACTGAGAGGTTGAAGAAGTCCGGATCAGGGCCCACTGGACCCAGCAGTAGCAGTCATTCCAGATCGGAGGAACAGCGATCGGCGATCGCAAATCAATCGGATTTCAATAGAAGGGCTTCCAAAATTGGCTTCGGAATTCACCAAACGTCTCAGAAGTTAGCCAAGCTCGCCAAGTTGGCGAAAAGGACTTCTGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTGGTGTTATTAAGCAGGATATCACTGCTTTAAACTCTGCGGTGGTGGATCTTCAGTTGCTGTGCAACTCTAGGAATGAGAGTGGAAATGTTTCTGTGGACACAACGAGCCATTCGAGCACCGTGGTGGATGACTTGAAGACGCGGTTGATGAGCGCCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAATGCACGAGAATAGAAGACAGTTGTTTTCTTCTTCTGCTTCTAAGGATTCAGCTAATCCTTTCATCCGGCAACGGCCCTTGGCTGCTAAGGCGGCAGCTAGTAGTTCTAATGCCCCTGCTGTTCCCTGGGCTAACGAGTCACCATCTTCATCTCAGGTGTTTCCCAAGAAGCGAATGGACACGGAGAGTCAACCATTGTTGCAGCAGCAGCAGCAGCAGGATGTAGTTCCATTACAAGACAGCTACATGCAAAGCAGAACCGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATTTTTAATCAGCTAGCGACGCTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGTCAAACGTAGAGGGAGCACAAGGGGCTTTGTTGAAATATCTGAACAGTATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1014 0.4576 MYVKAAQSSFRDRTHEFHNITERLKKSGSGPTGPSSSSHSRSEEQRSAIANQSDFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSVDTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKMHENRRQLFSSSASKDSANPFIRQRPLAAKAAASSSNAPAVPWANESPSSSQVFPKKRMDTESQPLLQQQQQQDVVPLQDSYMQSRTEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01919 337 PANTHER SYNTAXIN 50 329 IPR045242 -
Vian4g01919 337 MobiDBLite consensus disorder prediction 9 23 - -
Vian4g01919 337 Pfam SNARE domain 281 333 IPR000727 -
Vian4g01919 337 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Vian4g01919 337 MobiDBLite consensus disorder prediction 203 228 - -
Vian4g01919 337 CDD SNARE_syntaxin5 248 326 - -
Vian4g01919 337 MobiDBLite consensus disorder prediction 25 53 - -
Vian4g01919 337 MobiDBLite consensus disorder prediction 1 53 - -
Vian4g01919 337 SMART tSNARE_6 240 307 IPR000727 -
Vian4g01919 337 MobiDBLite consensus disorder prediction 201 228 - -
Vian4g01919 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Vian4g01919 337 SUPERFAMILY t-snare proteins 52 300 IPR010989 GO:0016020|GO:0016192
Vian4g01919 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian4g01919 337 Gene3D - 48 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01919 Vian-Chr4 35761863 35765489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01919 1 337 SNARE and Associated Proteins AT3G24350 63.760 4.74e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01919 K08490 - gmx:100811494 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01919 4 35761863 35765489 Vian4g01919 4 35761863 35765489 ECH