Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01913 ATGTCGATGTCGTCTAAAGAGAGAAGAAGATGCTCAAGCAGCGAAATGGCCTCTGTTTCAAGTACCATCTTTCCAGTATTTGGCACCCCCATCTTTGATGTAGAAGGTTACTCCAACCTAAGAAAACACGTCATTGCTCCCTATGACCGTATATATCAATTGTGGCAAACGTTCGTGGCGGCTTTGGTAGTGTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAACTGTTGGTTGGGTCATATTTGACTGTTGTTGATCTCCTTGTTGATGCCTTCTTTGCAGTTGATATAATCCTTACTTTTTTTGTGGCTTACTTCGATACATCAACTTATCTCCTCGTCGACGATCATAAGAAGATTGCTCTCAGGTACGTCAAAAAGTTGCACTTCCCCATGGATCTAGCCTCCACTCTGCCAATTGAGAAGATATATCAAATTCTGACGGGCAAGCCAACCAGAAGCGAGGTATTTGGTTTCCTAATTATGCTAAGACTCTGGAGATTGAGGCGTGTTAGCGAACTCTTCGCGAGGCTAGAGAAAGACATACGAATCAATTATTCTGCAACAAGATTTTGCAAACTTATATGTGTTACACTATTTGCAGCACACTTCGCAGGCTGCATGTTTTTTTGGTTGGCTGTCCAGCACAAGACACCGAAACACACATGGATCGGGAACAAAACACAGGATTTTCATGAATTGGGCGTCGGGTTGGGTTACACTTATTCTGTGTACTGGTCTGTTTCAACCCTTACCACCGTTGGATATGGAGATTTTTATGCAGTAAATTTAACGGAGATGCTTTTCTCCATTTTTTACATGCTTTTTAACATCGGCCTCGGAGCATATATTATTGGAAACATGACAACTCTGTTGGTTCATAGCTCTGTCGGAACCTTTGCCGTGAGGGATGTCTTCAACAAAATATTACAGTATGCAAACAAAAATAGACTCCCGGGACGATTAAAGGAGCAAATATTGGCACACATGCAATTGAAATTTAAGACTGCAGAGTTACAGCAAGAAGTGTTACAAGACCTACCTAAAACTATAAGATCCAGTATTGCTCAGCATCTTTTCAAAAACATTGTTGAAACAGCATATTTATTCAAAGGAGTTTCTGATTATTTTATCACCCAGCTGGTCTCAGAAACAAAGGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAAAATATTTCTACATCTTGTTATCTGGGTCACTGGATGTGTTGATATACAATACTGGGTCTGAACAGTTTTTATTCGAACTTGAATCTGGAGACATGGCAGGAGAAATAGGTGTGATGTTTAATATTCCACAACCTTTTACAGTAAGAAGTAGAGGGCTCTCCCAGGTCATACGAATCAATCATCATCACTTCAAGCAGATGATGCAACCATTCAGTGACGATGGGAAGGCAATCATGTACAACTTTATTCAGCATTTGAAGGGCCTCAAAAGCAAGGTGCTAGAAGAAATATCGTATGTAACAGAATTGCTGGGTTACCTTGAGCACTGGTTTTTGCAGCATCTGAGACAAAATGAGGGTACACTTCATGAAGTTTCAAGATATCAAGATCCATATAAAGAAGGAAAAACAGGAAATTCCAAACCACTGAGAAGCCCAGTCCCCGTTAGAGTTACAATCCACGGACACCGTCCCAATGAAAACAAAACGGGAAATGGATCAACGCCAAAGCTCATACTTCTCCCAAATTCGATAGAAGATATTTTCAGAGTTGCAGAGAGAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCATAGAAGTAGAACAATTAAACGCGATAAGGGAGAATGATGAGTTGTATATCCTCTAA 1878 0.4068 MSMSSKERRRCSSSEMASVSSTIFPVFGTPIFDVEGYSNLRKHVIAPYDRIYQLWQTFVAALVVYSAWASPFELAFRELLVGSYLTVVDLLVDAFFAVDIILTFFVAYFDTSTYLLVDDHKKIALRYVKKLHFPMDLASTLPIEKIYQILTGKPTRSEVFGFLIMLRLWRLRRVSELFARLEKDIRINYSATRFCKLICVTLFAAHFAGCMFFWLAVQHKTPKHTWIGNKTQDFHELGVGLGYTYSVYWSVSTLTTVGYGDFYAVNLTEMLFSIFYMLFNIGLGAYIIGNMTTLLVHSSVGTFAVRDVFNKILQYANKNRLPGRLKEQILAHMQLKFKTAELQQEVLQDLPKTIRSSIAQHLFKNIVETAYLFKGVSDYFITQLVSETKAEYYPSKVDIILQNEMPKYFYILLSGSLDVLIYNTGSEQFLFELESGDMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMMQPFSDDGKAIMYNFIQHLKGLKSKVLEEISYVTELLGYLEHWFLQHLRQNEGTLHEVSRYQDPYKEGKTGNSKPLRSPVPVRVTIHGHRPNENKTGNGSTPKLILLPNSIEDIFRVAERKFGKRGSKILMADGIEVEQLNAIRENDELYIL 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01913 625 Pfam KHA, dimerisation domain of potassium ion channel 556 624 IPR021789 -
Vian4g01913 625 Pfam Ion transport protein 53 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian4g01913 625 ProSiteProfiles KHA domain profile. 556 625 IPR021789 -
Vian4g01913 625 Gene3D Jelly Rolls 343 506 IPR014710 -
Vian4g01913 625 SMART cnmp_10 372 489 IPR000595 -
Vian4g01913 625 FunFam Potassium channel KAT2 360 496 - -
Vian4g01913 625 SUPERFAMILY cAMP-binding domain-like 304 492 IPR018490 -
Vian4g01913 625 PANTHER POTASSIUM CHANNEL AKT1 16 504 IPR045319 GO:0005249|GO:0006813
Vian4g01913 625 PRINTS EAG/ELK/ERG potassium channel family signature 100 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g01913 625 PRINTS EAG/ELK/ERG potassium channel family signature 243 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g01913 625 PRINTS EAG/ELK/ERG potassium channel family signature 287 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g01913 625 PRINTS EAG/ELK/ERG potassium channel family signature 89 99 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g01913 625 PRINTS EAG/ELK/ERG potassium channel family signature 269 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g01913 625 FunFam Potassium channel KAT3 54 297 - -
Vian4g01913 625 Gene3D - 53 297 - -
Vian4g01913 625 Pfam Cyclic nucleotide-binding domain 393 475 IPR000595 -
Vian4g01913 625 SUPERFAMILY Voltage-gated potassium channels 47 296 - -
Vian4g01913 625 ProSiteProfiles cAMP/cGMP binding motif profile. 372 491 IPR000595 -
Vian4g01913 625 CDD CAP_ED 372 485 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01913 Vian-Chr4 35672125 35679118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01913 8 624 Ion Channels AT4G32650 54.372 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01913 K21867 - gmx:100794620 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01913 4 35672125 35679118 Vian4g01913 4 35672125 35679118 ECH