Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01887 ATGGCGGTGGAGTTGATGAGCTTGCCGAAAATGGAGGAACAGAAGGCAATTCAAGAAGCAGCCATGGAAGGTCTCAAGGGAATGGAAAACTTCATCCATCTTCTCTCCAACGAACCCTCTCATCTCAACACTCACCTCACCCAAGCAACCGTTTCAAACTTCAAAAAGCTCATCTCTTTGCTCAACGGAACCGGCCATGCCCGTTTCCGTCGCGCGCCTCTCCCTTCAAACAACCAACCCATTCCACCGGCTAACCCGGTCACCGTCCACCAACCTCCCACCACCTTCGCCCCCACGCACTCGCACTCTCTCACTCTCGATTTCACCAAACCTAACATCTTCGCCGCCACCAACAATAAGTCCTCGGATCTCGAATTCTCAAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATCTCCTCCGCCATCACCGCCGATGGCAGCGTCTCCAACGGCAACCAAGCCTCCTCTCTCTTCCTCACCTCGCCTCCGCCGCCTTCTTCCTCCGGAAAACCGCCACTCGTCAAGAAGCGGTGCCACGACCACTTCGACGACGTCTCCGGCTCCACCAAGTGCCACTGCATTAAGAGAAGGAAGAATCGGGTGAAGAAGACGGTGAGAGTGCCGGCGATTAGTACGAAAATCGCCGATATCCCGTCGGACGAGTTCTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCACCGTACCCGAGGGGTTACTATAAGTGCAGTACGGTGAGAGGATGTCCGGCGAGGAAACACGTGGAACGTGCTTCGGACGATCCGACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACTCCATTCAGACCGCGTTGCAGGATAACATTTCCGGCGCCGTGGGTTTGGTTTTTCAGTAA 894 0.5515 MAVELMSLPKMEEQKAIQEAAMEGLKGMENFIHLLSNEPSHLNTHLTQATVSNFKKLISLLNGTGHARFRRAPLPSNNQPIPPANPVTVHQPPTTFAPTHSHSLTLDFTKPNIFAATNNKSSDLEFSKETFSVSSNSSFISSAITADGSVSNGNQASSLFLTSPPPPSSSGKPPLVKKRCHDHFDDVSGSTKCHCIKRRKNRVKKTVRVPAISTKIADIPSDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSIQTALQDNISGAVGLVFQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01887 297 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01887 297 MobiDBLite consensus disorder prediction 156 176 - -
Vian4g01887 297 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01887 297 SUPERFAMILY WRKY DNA-binding domain 218 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01887 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 282 IPR044810 GO:0003700
Vian4g01887 297 SMART WRKY_cls 220 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01887 297 Gene3D WRKY domain 204 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01887 297 FunFam WRKY transcription factor 65 204 281 - -
Vian4g01887 297 Pfam Plant zinc cluster domain 177 218 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01887 Vian-Chr4 35355536 35356879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01887 1 296 WRKY Transcription Factor Family AT2G24570 58.824 1.76e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian4g01887 WRKY 6.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01887 - - vum:124836200 436.032