LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01887	ATGGCGGTGGAGTTGATGAGCTTGCCGAAAATGGAGGAACAGAAGGCAATTCAAGAAGCAGCCATGGAAGGTCTCAAGGGAATGGAAAACTTCATCCATCTTCTCTCCAACGAACCCTCTCATCTCAACACTCACCTCACCCAAGCAACCGTTTCAAACTTCAAAAAGCTCATCTCTTTGCTCAACGGAACCGGCCATGCCCGTTTCCGTCGCGCGCCTCTCCCTTCAAACAACCAACCCATTCCACCGGCTAACCCGGTCACCGTCCACCAACCTCCCACCACCTTCGCCCCCACGCACTCGCACTCTCTCACTCTCGATTTCACCAAACCTAACATCTTCGCCGCCACCAACAATAAGTCCTCGGATCTCGAATTCTCAAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATCTCCTCCGCCATCACCGCCGATGGCAGCGTCTCCAACGGCAACCAAGCCTCCTCTCTCTTCCTCACCTCGCCTCCGCCGCCTTCTTCCTCCGGAAAACCGCCACTCGTCAAGAAGCGGTGCCACGACCACTTCGACGACGTCTCCGGCTCCACCAAGTGCCACTGCATTAAGAGAAGGAAGAATCGGGTGAAGAAGACGGTGAGAGTGCCGGCGATTAGTACGAAAATCGCCGATATCCCGTCGGACGAGTTCTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCACCGTACCCGAGGGGTTACTATAAGTGCAGTACGGTGAGAGGATGTCCGGCGAGGAAACACGTGGAACGTGCTTCGGACGATCCGACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACTCCATTCAGACCGCGTTGCAGGATAACATTTCCGGCGCCGTGGGTTTGGTTTTTCAGTAA	894	0.5515	MAVELMSLPKMEEQKAIQEAAMEGLKGMENFIHLLSNEPSHLNTHLTQATVSNFKKLISLLNGTGHARFRRAPLPSNNQPIPPANPVTVHQPPTTFAPTHSHSLTLDFTKPNIFAATNNKSSDLEFSKETFSVSSNSSFISSAITADGSVSNGNQASSLFLTSPPPPSSSGKPPLVKKRCHDHFDDVSGSTKCHCIKRRKNRVKKTVRVPAISTKIADIPSDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSIQTALQDNISGAVGLVFQ	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01887	297	ProSiteProfiles	WRKY domain profile.	215	281	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g01887	297	MobiDBLite	consensus disorder prediction	156	176	-	-
	Vian4g01887	297	Pfam	WRKY DNA -binding domain	222	278	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g01887	297	SUPERFAMILY	WRKY DNA-binding domain	218	280	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g01887	297	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	14	282	IPR044810	GO:0003700
	Vian4g01887	297	SMART	WRKY_cls	220	280	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g01887	297	Gene3D	WRKY domain	204	280	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g01887	297	FunFam	WRKY transcription factor 65	204	281	-	-
	Vian4g01887	297	Pfam	Plant zinc cluster domain	177	218	IPR018872	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01887	Vian-Chr4	35355536	35356879	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g01887	1	296	WRKY Transcription Factor Family	AT2G24570	58.824	1.76e-109	318

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vian4g01887		WRKY	6.5e-26	CL0274