Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01884 ATGGCTATTCTGGGTCTGGTTTTGTTTGCGCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAATGGAGGCTCAAGCGACGTGACACTGAAGAGTGGATGAGCCACCGTCAGCTCCCACAAAATCTGAGAGAGCGTGTCAGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGCGGGGTTGATGAAGAAACAATCCTACGTGGCCTGCCTATTGACCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCTTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGCGAGAGATTGGTATCATCATTGAGTACTCAAGGCACGTACATAGTTAGAGAAGGAGACCCGGTTACAGAGATGCTCTTTATCATCAGAGGGAGACTTGAAAGTTCAACCACAAATGGAGGCAGAACTGGTTTCTTCAACTCTATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCATTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGAACTGTTAAAGCCCTTGTAGAAGTTGAAGCATTTGCCCTAAGAGCGGAAGATCTTAAATTCGTGGCCAATCAGTTTAGACGTCTCCACAGCAAGAAGTTGCAGCACACTTTCCGTTTCTACTCTCACCATTGGAGGACATGGGCAACATGCTTCATTCAGGCTGCTTGGCGCCGGTTCAAGAAGAGAATGTTTGCCAAGAGCCTAAGCTTGAGGGAATCCGAGTCCTTCAATCACTATCAACATACTGCACAAGTAAAACAAAACCTAGGTGTCACTATACTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGAGTTCAGAAGATGAAGGATGTAGAGCTGCCCAAGTTGCAAAAGCCTGAAGAACCAGACTTTTCAGTAGAGCCTGATGATAATTAG 969 0.452 MAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWATCFIQAAWRRFKKRMFAKSLSLRESESFNHYQHTAQVKQNLGVTILASRFAANTRRGVQKMKDVELPKLQKPEEPDFSVEPDDN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01884 322 Pfam Cyclic nucleotide-binding domain 122 210 IPR000595 -
Vian4g01884 322 MobiDBLite consensus disorder prediction 299 315 - -
Vian4g01884 322 CDD CAP_ED 99 230 IPR000595 -
Vian4g01884 322 Gene3D Jelly Rolls 97 217 IPR014710 -
Vian4g01884 322 FunFam Cyclic nucleotide-gated ion channel 1 26 90 - -
Vian4g01884 322 Gene3D Helix hairpin bin 27 90 - -
Vian4g01884 322 SUPERFAMILY cAMP-binding domain-like 29 221 IPR018490 -
Vian4g01884 322 FunFam Cyclic nucleotide-gated ion channel 1 97 215 - -
Vian4g01884 322 ProSiteProfiles cAMP/cGMP binding motif profile. 99 182 IPR000595 -
Vian4g01884 322 MobiDBLite consensus disorder prediction 299 322 - -
Vian4g01884 322 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 315 - -
Vian4g01884 322 SMART cnmp_10 99 230 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01884 Vian-Chr4 35324637 35326097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01884 1 321 Ion Channels AT4G30360 78.402 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01884 K05391 - gmx:100803334 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01884 4 35324637 35326097 Vian4g01884 4 35324637 35326097 ECH