Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01880 ATGTGGTTGCCAAAGCATCGGTCAGATAAAAAGGATGGTGTGAGTGGATTAGTAGCAGTGGCAATTGATAAAAAGAAAGAAAGCCAATCTGCACTCAAATGGGCAGTTGACAATCTCCTCACCAGAAGTGCAACAGTAATTCTCATCCATGTCAAGCTTCTCGCACCAACCCTCTCTCCATCACCTTCTCTTTTCGCCCCTAGGATAAGTTCTTTCCTGGGTGATGATACTTCAGTGGTAAGCAAAGAACACGAAGGCCAAAACAGAAGTGTTTTCCTCCCATATCGTGTCTTCTGTACAAGAAAAGATATTCAATGCAAGGATGTCCTATTAGAAGATTCAGAAGTACCCAGAGCTATAATTGAATATGCTTCTCAGACAGGAGTTGAGCATCTGGTTCTTGGCTCTTCAGCAAAAACTAGTTTTCTCAAAAGATTCAAGGTGTCAGATATTCCAGGAGAAATTGCAAAAGGGGCGCCAGATTTCTGTACTGTCTATGTTATTGCGAAAGGAAAGATTCAAACTATGCGATCTGCTACTCGTCCTGCACCTGCCATTTTCTCTAACCAGGTCTGTCAAATTAACAATGGCAGGTCAAACCTTTCAGAGCCAAATGTGTTCTCATCTCGAAGCATAAGAGAGCAAGAAACGTATTCCTTTGATGCTGGATCACAGTATGATGAAACATTCAGGTCACCATTTACTAGGAAACGTTACAATGGCAGACAATATGGGGACACTCCCAATTTAGATACGGACATATCCTTTGTAAGCTCTGGAAGGAGAAGCACAGAACATTTGATCCCTTCATTGAACTTAGATACAGGAATATCCAACAGTCGGCTATCATATAGCTCAGACATAGATGCAAACTTCAGCTTTGAGTCAGCGTCTTATCGAAGGAAGTCTACGGAAATGGGCTCTCCTCTTGAATTATCATCATTCTCATTTGAGAGTGATAAGCAATCATCTTGTTCGTCACAAACAGCGGTAAGGAAAGTTCGCAGTGCTGTGGAGATCTGTTTGGATGACATGGAAGCTGAAATGAGAAGATTGAAGTTGGAGCTGAAGCAGACCATGAAAATGTATAACACGGCTTTGGAACTTCAGCGGTGGAAAATGGAGGAAGAGAGGAGATTGGAAGAAGCGAGGCTGGCTGAGGAAGCAGCACTGGCAATTGCAGAAAAGGAGAAAGCCAAGTCTAAAGCAGCCATTGAGGCTGCCGAAGCACAAAAAAGGATTGCAGAACTGGAGGCACAGAAGAGACTCAGTGCAGAAATGAAAGCACTTAAAGAATCAGAAGAGAAAAGAAAAGTGCTTGAATCTTTGGTAAATGTAGATGTCAGGTATAGAAAATATACTATTGAGGAGATTGAAGAAGCAACAAAATTTTTTTCTGAATCCCTTAAAATTGGAGAAGGAGGATATGGTCCTGTTTTCAAGTGCCTTTTGGATCACACCCCTGTTGCAGTCAAGGTTCTACGCCCTGATGCACAACAAGGAAGATCACAGTTTCAGCGAGAGGTTGAGGTATTGAGCTGCATACGGCATCCACACATGGTTCTACTCCTAGGAGCATGTCCAGAATATGGATGTCTAGTGTATGAGTATATGGCAAATGGTAGCTTGGAAGATCGCCTCTTTCGACAAGGCAACACTCCCCCACTGCCTTGGCAGCTAAGATTCAAGATAGCAGCGGAGATTGGCACAGGCTTGCTGTTCCTGCACCAGACAAAACCAGAACCTCTGGTGCACAGGGACTTGAAACCAGCCAACATCTTGCTTGACAGAAACTTTGTGTCCAAAATCAGTGATGTAGGTTTGGCCAGGCTAGTTCCACCATCTGTGGCAGACTCTGTCACGCAGTATCACATGACATCCGCAGCCGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGAATGTTAGGAGTGAAATCAGACATATACTCCCTTGGGATAATCTTTTTACAAATTTTAACAGCAAAATCACCTATGGGTTTGACCCATCATGTTGCAAGGGCCATTGAGAAAGGAACTTTATCTGAGATGTTGGATCCATCACTCTCTGATTGGCCACAAGAGGAGGCCTTGACGTTTGCTAAGTTGGGAGTGCAGTGTGCTGAATTAAGGCGCAGAGACAGACCTGATCTTGGCAAGGTTGTCCTACCAGAACTCGACAGACTCAGAAACCTTGCTGAAGATACTGACCTTATTTCAGCTTTGGGTAACCCTACGAATATGCCCCGAGACAGACATGTTTCAGCTGTACTGGAAGGAGATTGTCCTCCATTTCCTAACCCTGTCTCAGGGGAAATTAGAGCTAACAATTCAGTGACTTTCTGA 2352 0.4392 MWLPKHRSDKKDGVSGLVAVAIDKKKESQSALKWAVDNLLTRSATVILIHVKLLAPTLSPSPSLFAPRISSFLGDDTSVVSKEHEGQNRSVFLPYRVFCTRKDIQCKDVLLEDSEVPRAIIEYASQTGVEHLVLGSSAKTSFLKRFKVSDIPGEIAKGAPDFCTVYVIAKGKIQTMRSATRPAPAIFSNQVCQINNGRSNLSEPNVFSSRSIREQETYSFDAGSQYDETFRSPFTRKRYNGRQYGDTPNLDTDISFVSSGRRSTEHLIPSLNLDTGISNSRLSYSSDIDANFSFESASYRRKSTEMGSPLELSSFSFESDKQSSCSSQTAVRKVRSAVEICLDDMEAEMRRLKLELKQTMKMYNTALELQRWKMEEERRLEEARLAEEAALAIAEKEKAKSKAAIEAAEAQKRIAELEAQKRLSAEMKALKESEEKRKVLESLVNVDVRYRKYTIEEIEEATKFFSESLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPHMVLLLGACPEYGCLVYEYMANGSLEDRLFRQGNTPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLTHHVARAIEKGTLSEMLDPSLSDWPQEEALTFAKLGVQCAELRRRDRPDLGKVVLPELDRLRNLAEDTDLISALGNPTNMPRDRHVSAVLEGDCPPFPNPVSGEIRANNSVTF 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01880 783 PANTHER OS02G0152300 PROTEIN 18 756 - -
Vian4g01880 783 Gene3D Phosphorylase Kinase; domain 1 444 537 - -
Vian4g01880 783 SMART serkin_6 465 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01880 783 ProSiteProfiles Protein kinase domain profile. 465 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01880 783 Pfam Universal stress protein family 18 145 IPR006016 -
Vian4g01880 783 Gene3D Transferase(Phosphotransferase) domain 1 538 742 - -
Vian4g01880 783 Coils Coil 377 437 - -
Vian4g01880 783 FunFam U-box domain-containing protein 51 538 738 - -
Vian4g01880 783 CDD STK_N 17 171 - -
Vian4g01880 783 Gene3D HUPs 17 168 IPR014729 -
Vian4g01880 783 Coils Coil 335 362 - -
Vian4g01880 783 Pfam Protein kinase domain 467 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01880 783 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 160 - -
Vian4g01880 783 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 437 537 - -
Vian4g01880 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Vian4g01880 783 SUPERFAMILY Protein kinase-like (PK-like) 448 724 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01880 Vian-Chr4 35290102 35294818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01880 1 757 Receptor kinase-like Gene Family AT1G78940 54.753 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vian4g01880 Pkinase 3.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01880 - - gmx:100803867 1095.49