Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01877 ATGATAAAAGGAGTGGCGAGGGGATTGGCTTATCTGTACACGGAGTTCCCCGACCAAGCTTTACCACACGGTCATCTGAAATCGTCAAACGTTGTACTGGACGGTTCCTTCGAGGCTCGTTTGGCAGAGTACGGACTTGTGGCGGTGGTGGAGAAGAGCCACGCTCAGCAGTTCATGGTGGCTTACAAGTCTCCAGAGGCGAGCCAGTCTGAGAAGCCAAGCGAGAAGAGCGATGTGTGGTGTCTGGGGATTCTGATACTGGAGCTTTTGACGGGGAAGTTCCCTGCGAGTTATCTGAGGCATGGGAAGGGAGCGAATGAGGATTTGGCGGCGTGGGTAAACTCCATAGTGAGCGAAGGGTGGAATGCGGAGGTGCTTGATAAGGAGATTCCTGGGAGAGGGAGTGGAGAGGGTGAGATGGTGAAGCTGTTAAGGATTGGAATGGGATGCTGTGAATGGAGCTTGGAGAGTAGGTGGGGTTGGAAGGAAGCTGTGGCAAAGATTGAGGAGTTGAAGGAGAGTGACGATGGTGGTGAAGGTGGAAGTGAACTGGATCATCTCTACTCAGTTTCTACCAGTCTCGATGACTTCTCTCTCTCACAGTCTATTTCATGA 615 0.5203 MIKGVARGLAYLYTEFPDQALPHGHLKSSNVVLDGSFEARLAEYGLVAVVEKSHAQQFMVAYKSPEASQSEKPSEKSDVWCLGILILELLTGKFPASYLRHGKGANEDLAAWVNSIVSEGWNAEVLDKEIPGRGSGEGEMVKLLRIGMGCCEWSLESRWGWKEAVAKIEELKESDDGGEGGSELDHLYSVSTSLDDFSLSQSIS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01877 204 Gene3D Transferase(Phosphotransferase) domain 1 1 185 - -
Vian4g01877 204 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 175 IPR046959 -
Vian4g01877 204 Pfam Protein kinase domain 2 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01877 204 SUPERFAMILY Protein kinase-like (PK-like) 2 170 IPR011009 -
Vian4g01877 204 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01877 Vian-Chr4 35264477 35265091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01877 1 179 Receptor kinase-like Gene Family AT4G31250 56.983 2.66e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian4g01877 Pkinase 4.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01877 - - ccaj:109790244 309.301