Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01871 ATGTCCATGGATCCTACCAAGAAGCCTAACAAGATCAGAGACATAGTGAGGCTTCAACAGATTCTTAAGAAATGGAGAAGGGTTGCAAACTCTTCAAAAACAAGTAGAAGTAACAGTAACAACAGCAACAACACCGGCAGAAGCATCAAATTTCTCAAAAGAACACTTTCTCTGTCTGAACGTGAGGGAGGAGGATCGAGCAGTGTTGTTCCCAAGGGCTACGTTGCTGTTTGTGTTGGCTTGGACCTTAGCAGGTTCGTTATACCAACCGAGTATTTGGGTCACCAAGCCTTTCACATGTTACTCAGAGAAGCTGAGGAAGAGTTTGGGTTTGAACAAACTGGGGTTCTCAGAATCCCTTGTGAAGTGTCTGTGTTCGAGAGTATCTTGAAGATTGTGGAGAGAAAGGACAAGTTTTTCACTCAGAAATGCAGGTTTAGCATTGAGAAAATGATGGGATATTGTTCCTCCAACAACCTTGCTTATTCTCATCACCCTCCAAGTCCAATGTGCAGATAG 519 0.4335 MSMDPTKKPNKIRDIVRLQQILKKWRRVANSSKTSRSNSNNSNNTGRSIKFLKRTLSLSEREGGGSSSVVPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKIVERKDKFFTQKCRFSIEKMMGYCSSNNLAYSHHPPSPMCR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01871 172 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 42 129 IPR003676 GO:0009733
Vian4g01871 172 Pfam Auxin responsive protein 24 132 IPR003676 GO:0009733
Vian4g01871 172 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01871 Vian-Chr4 35216279 35216797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01871 6 172 Calmodulin-binding Proteins AT4G31320 51.795 2.15e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01871 K14488 - gmx:100527662 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01871 4 35216279 35216797 Vian4g01871 4 35216279 35216797 ECH