Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01866 ATGCAAAAGGAAAAGGAAGCCATTATCAAGGAGGGAAAGGATATAGAAATGGAAGGAACTCATGCAAAAGAGGAAACCCTACCACCAGGATTTCGATTTCATCCTACAGATGAAGAACTTGTTACTTGCTATCTCCTAAATAAGATATCGGATTCTAATTTCACAGGCAGAGCAATAACTGATGTAGATCTCAACAAAAGTGAGCCATGGGAGCTTCCAGGGAAAGCTAAGATGGGTGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCGACGGGTGTGAGAACCAATCGAGCAACAAACACAGGGTATTGGAAGACAACAGGGAAAGACAAGGAGATCTTGAACAGTGGAACATCAGAATTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCAAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGTTTCAGAACTACTAGGCAGGATGAATGGGTGGTTTGCAGGGTATTCAAGAAGAGTGGTGGTGCAAAAAAGTTCCCTTCTTCCAACCATACAAGAGCAGTGAATCCTTACAGCTTAGAAATAGGGCCAAATATTATGCAGCCACCAGTGATGCAATTGGGAGATCCTGCTGCTCATTTCCTTTATGGAAGGAACTACATGAACAGTGTTGAGTTAGGTGAACTTTCTAGGGTTTTAAGAGGGGGAGGATCAACAAGTAGTGTCAATCAACCAATGCAATCCCAATTGGGGTACCCTACATCAGCAGGATTCACCATTTCAGGACTGAATTTGAATCTGGGAGGAGGAGGAGGAGGAGCAACAACCACAACACAACCCATTTTTCGACCAATGCAAGCTTCTTCTGCTCCTGTTCATACAATGGCTCAAGTTCTTGATGTCAATTCCAGCATGATGACAACCGGATCTCTTGGTGCAGATGTAGGTTATGGATCAGAAATGAGTAATAACATGAATTCTCAAGGGAATAGGTTCATGGGTATGGACCATTGCATGGATCTAGACAACTACTGGCCTTCCTACTAA 1059 0.4287 MQKEKEAIIKEGKDIEMEGTHAKEETLPPGFRFHPTDEELVTCYLLNKISDSNFTGRAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSGTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTTRQDEWVVCRVFKKSGGAKKFPSSNHTRAVNPYSLEIGPNIMQPPVMQLGDPAAHFLYGRNYMNSVELGELSRVLRGGGSTSSVNQPMQSQLGYPTSAGFTISGLNLNLGGGGGGATTTTQPIFRPMQASSAPVHTMAQVLDVNSSMMTTGSLGADVGYGSEMSNNMNSQGNRFMGMDHCMDLDNYWPSY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01866 352 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Vian4g01866 352 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Vian4g01866 352 SUPERFAMILY NAC domain 20 176 IPR036093 GO:0003677|GO:0006355
Vian4g01866 352 Gene3D NAC domain 36 179 IPR036093 GO:0003677|GO:0006355
Vian4g01866 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 274 - -
Vian4g01866 352 FunFam NAC domain-containing protein 100-like 36 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01866 Vian-Chr4 35150147 35152011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01866 23 352 NAC Transcription Factor Family AT2G24430 54.155 4.56e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian4g01866 NAM 4.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01866 - - gmx:100804931 605.52