Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01850 ATGTTTGCAGTTACACCATATTCTCCGGCGTCCACGCCGGTTGACGTCGTTCCTCAGCCGTTTCCGCAACCAGCAGCACCCGCATTCCAGTCCTCGCCGTCACCATCGATGTTTCTGACGCCTCCAGCCCCGTCCTCCCCGTCGCCGGAAACTTTATTCTTCCAAGGTTTGCCTCTACCGCCATCTTCAGTTACACCTGTTCCTCTGACGGTGCCGGCGTTGCCGTCTCCGTCGCCGGAATCTCTCACTCCGCCGCTTGTAGTTGCGCCATCGCCTCCGTCTCCCACCGCCAGTTTTCCACCTGCATTGCCAGATATGCCTCTGACACCGGAGGCGGCGGCGGTGACGACGTCGACTGTTCCTCCACCGCCTTTACCTCCTTCATTCACGACGGAACCAACCCTGGCAACGCCGTGGAGCCCCGCCTTGCCGTTATCTGCGCCGGAAGTGAATTTGCCGGTGGCTGTGGATTTTCAGAAGGCCTCAACATACCACGTGTCAAGTGGGCTTATTGTTGGGCTTGTAATTGGGGCAATCGTTTTGGTGTTTGTTTTTAGTATTGGATTACTTCTATGCAGGAATAGGAAGAAAACCAAACAGAAGAATCTGTGCACGGGTCGCTCTAAGGAATCACCACCCTCCATTGAATCCAAGGGATCTCATGTTATTCAAGTGCCACCAAATCCAACGCTGCCACCGAATCTCAAATCAGGTTCTTTTAAGTCAGTGTCTGTGAAAACAATTCCAAATCATGCTCCAAGGGCAGCCTTCAGTCCCGGGAATGGTAGTTTCACGTATGATGAAATATTAGTGGCCACTAATTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTCCCATGTGGAAAGCAAATTGCAGTTAAGCAACTAAAATCAGGTAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGTCGAGTGCATCATAAGCATCTTGTTGAATTGGCTGGCTACTGCGTTTCTGGGGCAGAGAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTGCACGGGGAGGGGAGTATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGGTAATCCAGCAATTATTCACCGTGATATTAAGGCATCTAATATTCTTCTTGATTTTAATTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAGTCTTACCAAACGATAGCCATATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATGTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTACGGAGTCATGCTTTTGGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCTAGGATTGAGAGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTCGAGCACTACAAGAAGAGAATTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAACTGCGATGCTGATGAGATGGTTAGAATGGTTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAAACTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTTACTGATCTTGTTGGAGATGTTACACCGGAGAATACCCCAGAACACAATTGGTCAAAGTATTTAGATTATGGCGACAACCAATAG 1749 0.4791 MFAVTPYSPASTPVDVVPQPFPQPAAPAFQSSPSPSMFLTPPAPSSPSPETLFFQGLPLPPSSVTPVPLTVPALPSPSPESLTPPLVVAPSPPSPTASFPPALPDMPLTPEAAAVTTSTVPPPPLPPSFTTEPTLATPWSPALPLSAPEVNLPVAVDFQKASTYHVSSGLIVGLVIGAIVLVFVFSIGLLLCRNRKKTKQKNLCTGRSKESPPSIESKGSHVIQVPPNPTLPPNLKSGSFKSVSVKTIPNHAPRAAFSPGNGSFTYDEILVATNCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELAGYCVSGAERMLVYEFVPNNTLEFHLHGEGSIFLGWTTRIKIALGSAKGLAYLHEGNPAIIHRDIKASNILLDFNFEPKVSDFGLAKVLPNDSHISHLTTRVMGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRIESLVDWARPLLARALQEENFDNLVDPRLQKNCDADEMVRMVTCAAACVRHSSKLRPRMSQIVGALEGVVSLTDLVGDVTPENTPEHNWSKYLDYGDNQ 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01850 582 ProSiteProfiles Protein kinase domain profile. 276 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01850 582 CDD STKc_IRAK 282 551 - -
Vian4g01850 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Vian4g01850 582 MobiDBLite consensus disorder prediction 13 29 - -
Vian4g01850 582 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524
Vian4g01850 582 SUPERFAMILY Protein kinase-like (PK-like) 254 549 IPR011009 -
Vian4g01850 582 Gene3D Transferase(Phosphotransferase) domain 1 352 559 - -
Vian4g01850 582 FunFam Proline-rich receptor-like protein kinase PERK8 249 351 - -
Vian4g01850 582 MobiDBLite consensus disorder prediction 201 228 - -
Vian4g01850 582 SMART serkin_6 276 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01850 582 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 179 559 IPR047117 -
Vian4g01850 582 Pfam Protein kinase domain 277 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01850 582 Gene3D Phosphorylase Kinase; domain 1 239 351 - -
Vian4g01850 582 MobiDBLite consensus disorder prediction 205 224 - -
Vian4g01850 582 FunFam proline-rich receptor-like protein kinase PERK8 352 564 - -
Vian4g01850 582 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01850 Vian-Chr4 34867643 34871576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01850 166 564 Trihelix Transcription Factor Family AT5G38560 52.723 5.60e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian4g01850 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01850 - - vum:124823967 969.918