Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01836 ATGGAACCGAGTGAAACGACGTCGGATTCAGTTCCGCGGAAATTGGCAAGGCAATTGGATTTCACAGTCGTTTACAGAGATCATCCGCACCTGAAACTGCCTCCTCAATCACTACCGCCGCATTCACTTCTGCCACTCTCATGGCATCCTCCCTTGCATTTAAATTTGCAGACACCGGGGCAACGGCCATGGTTATGTTTGGAATCACAGGAGCCACAGGAGCAACAGCCCTGGCTACATTCACTGCGACCGAAGCTAGTTTCGCCGGTTGGTCGATTTCCGCAGCCGGTGCAGAAACTTCCGGTTAAGGTGTTGCAAGAGGTGAAGTCAGAGTCTCCTATATCACAACGTCCATTTAACGTGGAATTAAAGGACACGACACCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGTATCTATTGTGATGGCTGCAACTGTGTAAATTGTCATAATAATGAGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAAAGAAACCCAAATGCTTTCAGACCAAAAATTGCCAGCAGTCCTCAAGAACAACGAAATTCCAAGGAAAGTGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACTGAAAGAAGAGCAATTTTTCACAGAGAGTATAGTCTAGTTCACATCAAACAGGGAACTAATGCTGCTGTAACTGAAGTCGTTGGATCATCTGGCTATAGAAAATATATAACACCCAAGAGGAGAAAAATTCATGAATCGTTTTCGGGAAAGTCAGCTGCGGATCAAACTGTTAACACGACAGGCCAATACCTACAGGTGTTTTCTTCTTTGCCTTTCTCAGTCATGACAGGATTTACTGGGATCTATGAAACTGATCGAATGGCTTCGTCATCTTCAACTCTGTCATATTCCTTTGTCTCTGACCATGTCAACACAAGAATTTCAGGGTCTTCAAGGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGCTCACTTTTTGTTATTCTCTCAGGAGTATCTGCAAAGACTGATGCAGAAGCGGAAGGGAAAATAGATCGACAAACAAAAGCTGAGAACTCTAAAGCTTCTGTTGCTTCATCAGCTAAATCGTTACAGGAAACTAAAGATGGTCGCCAGCCCGTTTGTGATGATGACGTGAATAAAGCTGTGGCAGATGCAGTTGATATTGCAAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGACAACATGTTTTTTGGAAATACTTCTGCCGATGGAGCTGCATATCAAAACATGATTCAAAAGTCATTAAATTCTGATGAAAGCTCTGATGCTTACGGAGAGCAGGAAAGACTTATAATGACCAAACTCTTGGATGTTCTTCGCGAACTCGTTACTCTTGGTAGCATAAAAGGTTAG 1578 0.4278 MEPSETTSDSVPRKLARQLDFTVVYRDHPHLKLPPQSLPPHSLLPLSWHPPLHLNLQTPGQRPWLCLESQEPQEQQPWLHSLRPKLVSPVGRFPQPVQKLPVKVLQEVKSESPISQRPFNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNEDNEAARQEAVGITLERNPNAFRPKIASSPQEQRNSKESEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYSLVHIKQGTNAAVTEVVGSSGYRKYITPKRRKIHESFSGKSAADQTVNTTGQYLQVFSSLPFSVMTGFTGIYETDRMASSSSTLSYSFVSDHVNTRISGSSRSVLADVLQPQNVKNLCSLFVILSGVSAKTDAEAEGKIDRQTKAENSKASVASSAKSLQETKDGRQPVCDDDVNKAVADAVDIANYNRPLSPETLALMCDEQDNMFFGNTSADGAAYQNMIQKSLNSDESSDAYGEQERLIMTKLLDVLRELVTLGSIKG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01836 525 PANTHER TESMIN/TSO1-RELATED 73 515 IPR028307 -
Vian4g01836 525 SMART CXC_2 129 169 IPR033467 -
Vian4g01836 525 SMART CXC_2 212 253 IPR033467 -
Vian4g01836 525 MobiDBLite consensus disorder prediction 410 426 - -
Vian4g01836 525 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 131 167 IPR005172 -
Vian4g01836 525 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 215 249 IPR005172 -
Vian4g01836 525 ProSiteProfiles CRC domain profile. 130 252 IPR005172 -
Vian4g01836 525 MobiDBLite consensus disorder prediction 398 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01836 Vian-Chr4 34693544 34697397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01836 13 524 CPP Transcription Factor Family AT4G29000 43.097 2.11e-121 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vian4g01836 TCR 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01836 - K21776 gmx:100811459 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01836 4 34693544 34697397 Vian4g01836 4 34693544 34697397 ECH