Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01828 ATGGAAGCAGAGAGATACACCAGTCAGCGGTGGCGTCCTACCGAAGATCAGACCCAGATGATGACCAGAATCTACAACTTTGGGGTCACACACCCAAGTAGAGCGCAAGTTGTCGAGATCACGTCTCGACTAAGGATCTTCGGAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAATCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCTACTGGCACTCAGTTTTCGCAACTGCCGCTATATATGTACGATTATGACTGGGTGATTATGAGGGCACCGAGGCTGCTGAATCTGTTTCCCGTTCCGATCATCATCGACGACGATAGGGACGTACGACAAATCCCTCCACCCATGCTTCTCACATTCCTAACCAGAGCTCCCTCAACGGAGCTCTCCCTTAGACCGCCACAACCAGCTCGAGAATTCTTCCGTTGA 450 0.5244 MEAERYTSQRWRPTEDQTQMMTRIYNFGVTHPSRAQVVEITSRLRIFGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYDYDWVIMRAPRLLNLFPVPIIIDDDRDVRQIPPPMLLTFLTRAPSTELSLRPPQPAREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01828 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian4g01828 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vian4g01828 149 Gene3D - 8 73 - -
Vian4g01828 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 72 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01828 Vian-Chr4 34608045 34608600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01828 1 72 Wox Gene Family AT5G59340 38.889 5.59e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian4g01828 Homeodomain 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01828 - K08052 vum:124821070 274.248