Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01822 ATGGACAGGGTCATCGGCGGCAAGTTTAAGACTGGTCGGAAAATCGGAAGCGGTTCATTTGGAGAAATTTATATAGCCTCAAATATGGACACCTCGGAGATTGTTGCCATCAAGATGGAAAACAAGAGAACCAAACATCCACAACTATTGTATGAGGCAAAGTTATATAGCATTCTTCAAGGAGGAAGTGGTGTTCCATGTATGAAGTGGTGTGGTACTGATGGAGACAATAATGTTTTAGTTATTGATCTTCTGGGACGGAGTCTTGAAGACTTTTTTGTCTATTGCGGGAGGAAATTGTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTGACAAGAATAGAGTATCTGCATTCCAAGGGATTTTTGCATAGAGATATCAAACCAGATAATTTTCTTATGGGTCTTGGGAAGAAATCAAATCAGGTTTATATTATTGATTTCGGACTAGCGAAAAGATATAGGGATCCAAACACAAATAAGCACATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCTCGTTACGCAAGTTGCAACACTCACATGGGAATTGAACAAAGTCGCCGTGATGATTTGGAGTCTCTTGGCTATGTTCTAATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTTTGAAAGCTGCCACCAAAAAGGAAAAATATGACAATATCTGTGACAAGAAGTTATCAACTCCTATTGAGGTGCTCTGCAAGTCATTTCCTGTGGAGTTTGCTACATACTTTCATTATTGCCAATCTTTGACATTTGATCAACACCCAGATTATGGATACTTGAAGCGCCTTTTTAGTGATTTGTTCAAACGAGAAGGATATAATTCCGACTATATATATGACTGGACCATCCTCAAATATCAGCAGTCTCAACAGACAAAGAAACAAAATCAATCATCTTCTTCAGCTGCATTGCCTAGCAATCTAGAACCAGCAGTTGTGGAAAACCCCAAAGGAGCCAATGATTCAACTCATGTTAATGTAACAAATATGTTGGCTAGTCTTGAACTCCCAAGTGCACGTGCGCAGCCTAAGCCATCTAATGCTCGGAATCTGGATGCCAAGATTCGGACTGAGAAACATGGTGTGAACAATATTCCACCTAGTTCCTCTGCCTTGCCCAAATCCTCTACAGGAAATGTCTCGAAACCAGAAAAGTCCACAGGAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATTCTCGTGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCTGCCAAATAG 1281 0.4044 MDRVIGGKFKTGRKIGSGSFGEIYIASNMDTSEIVAIKMENKRTKHPQLLYEAKLYSILQGGSGVPCMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKLSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKSNQVYIIDFGLAKRYRDPNTNKHIPYRENKSLTGTARYASCNTHMGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAATKKEKYDNICDKKLSTPIEVLCKSFPVEFATYFHYCQSLTFDQHPDYGYLKRLFSDLFKREGYNSDYIYDWTILKYQQSQQTKKQNQSSSSAALPSNLEPAVVENPKGANDSTHVNVTNMLASLELPSARAQPKPSNARNLDAKIRTEKHGVNNIPPSSSALPKSSTGNVSKPEKSTGTSNLGRVFGSNSRVSSSWIPSLRRISSAK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01822 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01822 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vian4g01822 426 PANTHER CASEIN KINASE-RELATED 13 326 - -
Vian4g01822 426 MobiDBLite consensus disorder prediction 365 426 - -
Vian4g01822 426 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vian4g01822 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vian4g01822 426 FunFam Casein kinase I isoform delta-like 1 339 - -
Vian4g01822 426 Pfam Protein kinase domain 9 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01822 426 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01822 426 MobiDBLite consensus disorder prediction 371 426 - -
Vian4g01822 426 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01822 Vian-Chr4 34506522 34512399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01822 9 236 AGC Kinase Gene Family AT3G08720 26.293 7.17e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vian4g01822 Pkinase 3.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01822 K08960 - gmx:100792736 761.525