Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01811 ATGTCGTTGGAGACCGAGGCGGGGCGAGAGAGCAAGAAGATAAAGCGCATTCGCGACTCGAGCAAGCATCCAGTGTACCGTGGCGTGCGGATGCGGAACTGGGGGAAGTGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCGACGCCGGAGATGGCGGCGAGAGCGCACGACGTGGCCGCCCTCAGCATCAAGGGCTCCGCCGCCATTCTGAACTTCCCCCACCTGGCGAACTCCCTCCCACGCCCGGCCTCCCTGGCTGCGCGCGACGTCCAGGCAGCGGCGGCGAAGGCGGCCCACATGGAGCCATCCTCCCTCTCGTCCTTGGTGTCGGCAATGGACCTGTCCTCTGCCTCAGACGAGTTGACTCAGATAGTTGAACTCCCGTCCCTGGAAAGCACCGATGATGGGTGCGTGGAGTTGGAAAAGGAGTTCGTTTTCGTGGACTCGGTGGACACGTGGATGTATCAGCCACCACCCTTTGATTTTGACGCGGAACGAGACATTGCCTTGGAGGGTCTGATAGAAAGGGGAAATGGGAATATTGACCACGAAGACGACGACGATGATTATGTTATTTGGCCACACGTTTTACTTTGTGTATCTTTCTTTGCTTGTTTCGATGATCTTGGTTTGGGTGGTGGTTGGCAGAGATTTTTGCCTTTAATACTAAAGGATGTGAGTGTGCAGCTTGGTTTGGTTTTGCTATGCCAAATTAGAGAGGGTGGTGGGTGTGACCCATAA 768 0.5625 MSLETEAGRESKKIKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHLANSLPRPASLAARDVQAAAAKAAHMEPSSLSSLVSAMDLSSASDELTQIVELPSLESTDDGCVELEKEFVFVDSVDTWMYQPPPFDFDAERDIALEGLIERGNGNIDHEDDDDDYVIWPHVLLCVSFFACFDDLGLGGGWQRFLPLILKDVSVQLGLVLLCQIREGGGCDP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01811 255 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Vian4g01811 255 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vian4g01811 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 147 - -
Vian4g01811 255 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Vian4g01811 255 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vian4g01811 255 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vian4g01811 255 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vian4g01811 255 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Vian4g01811 255 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Vian4g01811 255 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01811 Vian-Chr4 34432362 34433482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01811 1 167 AP2-EREBP Transcription Factor Family AT5G11590 66.129 3.75e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian4g01811 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01811 K09286 - gmx:100813069 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01811 4 34432362 34433482 Vian4g01811 4 34432362 34433482 ECH