Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01803 ATGGAAGCACAAGAGTTATTCCAGAACACCTTTTACCCTCAATTCTCCTCCGACAACGTCACTTCCTCTAACACCAACGCCTCCACCACCGACCACTTCATCGTCGAAGATTTCTTCGACTTCTCAAACAGCGACGAGGCTCCCCTCATCGACGCCACCTTTGACTCTCTCCCCACTGACCACTCTTCCACCGTAACCAACCTCGACACCACCACCAACAACTCCAATTTCTCCGCCACCGATGCTCATTTCTCCGGTGACCTCTCCCTCCCGTATGACGATCTTGCTGAATTGGAGTGGCTGTCGAAATTCGCCGAGGAATCCTTTTCCAGTGAGGATTTACAGAAGCTGCAGCTGATATCCGGTGCCGGAGTGCAAAAGGAAACCGCATCGGAAACGCGAGACCCGAACCCGGCTCTGTTCAACCCTCAAGTATCGGTTCGGGGGAAGGCGAGGAGTAAGCGGACTCGTGGACCACCATGCAATTGGTCCTCTCGATTGGTTGTCCTCTCTCCGAACACGATGTCTCCGGAGTCTTCTCATTCATACAGCGGTAAGAAGGTCGCCCCGCGGAGGAGGGATGTGAGCGAAGGCAGCAGCGAGGGCAGGAAGTGTCTGCATTGCGCAACAGACAAAACGCCACAGTGGCGGACGGGTCCCATGGGTCCTAAAACACTTTGCAATGCATGCGGCGTGAGGTACAAGTCCGGTAGGCTGGTGCCGGAGTACAGGCCCGCCGCAAGCCCAACCTTCGTGCTGACAAAACACTCGAACTCGCACCGGAAAGTGTTGGAGCTGCGACGGCAGAAGGAAATGGTGAGGGTCCAGCAGCAGCAATTGCTCCATCTGCAACATCAGCAGAACATGATGTTCGATGTTCCATCCAACGGTGAGGATTATTTGATCCATCAGCAATGGGCTCCGACTTCCCACACCTCATCTAATCTCCTGCTAGACTAG 960 0.5458 MEAQELFQNTFYPQFSSDNVTSSNTNASTTDHFIVEDFFDFSNSDEAPLIDATFDSLPTDHSSTVTNLDTTTNNSNFSATDAHFSGDLSLPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQKETASETRDPNPALFNPQVSVRGKARSKRTRGPPCNWSSRLVVLSPNTMSPESSHSYSGKKVAPRRRDVSEGSSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQQQLLHLQHQQNMMFDVPSNGEDYLIHQQWAPTSHTSSNLLLD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01803 319 FunFam GATA transcription factor 194 280 - -
Vian4g01803 319 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Vian4g01803 319 Gene3D - 198 249 IPR013088 GO:0006355|GO:0008270
Vian4g01803 319 PANTHER GATA TRANSCRIPTION FACTOR 21 278 - -
Vian4g01803 319 MobiDBLite consensus disorder prediction 166 183 - -
Vian4g01803 319 SMART GATA_3 199 249 IPR000679 GO:0006355|GO:0043565
Vian4g01803 319 PIRSF Txn_fac_GATA_plant 1 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vian4g01803 319 MobiDBLite consensus disorder prediction 127 202 - -
Vian4g01803 319 MobiDBLite consensus disorder prediction 185 202 - -
Vian4g01803 319 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Vian4g01803 319 Pfam GATA zinc finger 205 238 IPR000679 GO:0006355|GO:0043565
Vian4g01803 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 263 - -
Vian4g01803 319 ProSiteProfiles GATA-type zinc finger domain profile. 199 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01803 Vian-Chr4 34328771 34330026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01803 27 303 C2C2-Gata Transcription Factor Family AT4G32890 49.827 1.53e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian4g01803 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01803 - - gmx:100776588 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01803 4 34328771 34330026 Vian4g01803 4 34328771 34330026 ECH