Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01802 ATGGCTGTGAGTTCGGCCTGCAAAGATGGGAGCAAGGTGGCAATGGACAACGGCAAGTATGTCCGCTATACACCCGAACAGGTGGACGCACTGGAAAGGCTCTACCATGAATGCCCCAAACCAAGTTCCCTCCGCCGCCAGCAACTCATAAGAGAGTGCCCCATTCTTTCCAACATTGAACCCAAACAGATCAAGGTTTGGTTCCAAAACCGAAGGTGTAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGGTGTGAACAGGAAGCTGACAGCAATGAATAAGTTACTAATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTATATGAAAACAGCTTTTTCCGCCAACAGACTCAGAACGCTACGGTTGCCACGACGGACACGAGCTGTGAGTCGGTGGTGACGAGCGGTCAGCGGCACTTGACGCCCCAGCATCCCCCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCCGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCGTGGTTTCGTGATTGCCGAACCGTGGACGTTCTAAATGTCATGTCCACTGGAAATGGTGGAACCATTGAGCTACTTTACATGCAGTTGTATGCGCCAACAACTTTAGCACCTGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAAGATGGTAGTCTAGTGGTCTGTGAAAGATCACTCAACAATACTCAGAATGGTCCTGCTATGCCTCCGGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGCTATCTGATAAGACCTTGCGAAGGAGGGGGGTCCATTATCCATATTGTTGATCATATGGTTCTAGAGCCATGGAGTGTTCCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGTTGCTATCTCAGAGGACTACTATGGCGGCCTTACGTCATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACAGGATGGGGAAGAAGGCCTGCAGCTTTACGTGCACTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGCTTTGCCGATGATGGCTGGTCCATGTTAGAAAGTGATGGCATAGATGATGTCACTCTTCTAGTGAATTCCTCACCTAGCAAGATGATGGGAGCTAACCTTGGCTATAACACCAATGGATTTCCTTCTATGAGCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTTCCTCCAGCAATTCTTCTTAGATTCTTGAGGGAGCACCGGTCAGAATGGGCAGATAGCAGCATTGATGCCTATTCAGCTGCTGCCATTAAAGCCGGTCCCTGTAGCTTGCCAGGGGCCCGACCAGGAGGAGGTTTTGGGGGTCAGGTTATTCTTCCGCTAGCTCACACAATCGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTATACCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGACGAGCATGCAGTTGGCACCAGCGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGGTTTCGCATTATACCACTTGATTCTAGCTCAGATGCTGCTAGTCCAAACCGGACACTTGATCTGGCTTCTGCACTTGAGGTTGGAACCACAGCAAACAAAGCAGCCGGTGATAACGCAGGTCATTCTGGGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGAGAACATAGCAACCATGGCCAGACAGTATGTTCGTAGTATCATTGCCTCTGTTCAAAGGGTTTCATTAGCACTTTCTCCTTCCCGTTTTGGTTCTCACAATGCATTTCACTTACCACCTGGCACTCCTGAGGCTCAAACACTTGCTCGATGGATCTCTAACAGCTATAGGTTCTATCTAGGGGTAGAACTTCTTAAATGTGAAGGCAGTGAATCCATTCTCAAGCCTCTTTGGCATCACTCAGATGCAATTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAAACAACTTTGGTTGCACTTCAAGACATAACCCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACCCTGTGCAGCGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGAATCTGTTTGTCGAGCATGGGTAGGCCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGTATTAAACGAAGAAGAATCTGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2523 0.4792 MAVSSACKDGSKVAMDNGKYVRYTPEQVDALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATVATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLSQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGANLGYNTNGFPSMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARPGGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSSDAASPNRTLDLASALEVGTTANKAAGDNAGHSGSTKSVMTIAFQFAFEVHLQENIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWISNSYRFYLGVELLKCEGSESILKPLWHHSDAILCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01802 840 SUPERFAMILY Bet v1-like 162 373 - -
Vian4g01802 840 Coils Coil 88 115 - -
Vian4g01802 840 CDD homeodomain 19 79 IPR001356 GO:0003677
Vian4g01802 840 Gene3D - 197 378 IPR023393 -
Vian4g01802 840 FunFam Homeobox-leucine zipper protein REVOLUTA 19 74 - -
Vian4g01802 840 Pfam START domain 163 371 IPR002913 GO:0008289
Vian4g01802 840 CDD bZIP 71 110 - -
Vian4g01802 840 Pfam Homeodomain 19 77 IPR001356 GO:0003677
Vian4g01802 840 SMART HOX_1 16 82 IPR001356 GO:0003677
Vian4g01802 840 CDD START_ArGLABRA2_like 157 372 - -
Vian4g01802 840 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Vian4g01802 840 SMART START_1 162 372 IPR002913 GO:0008289
Vian4g01802 840 Pfam MEKHLA domain 699 839 IPR013978 -
Vian4g01802 840 Gene3D - 10 84 - -
Vian4g01802 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 840 IPR044830 GO:0003700
Vian4g01802 840 SUPERFAMILY Homeodomain-like 18 81 IPR009057 -
Vian4g01802 840 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01802 Vian-Chr4 34298397 34303605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01802 15 840 Homeobox Transcription Factor Family AT4G32880 80.746 0.0 1398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian4g01802 START 1.2e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01802 K09338 - gmx:100815727 1615.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01802 4 34298397 34303605 Vian4g01802 4 34298397 34303605 ECH