Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01801 ATGGCCAAAGGATCTTCAGAGACAAAATCCATGACATTTATATGCCTCTTCTTGTTCATGCTCAATTTCCACTCATCCCACGGAGATCCAAAAGAGGTTCAGATTTTATTATCCTTCAAAGCTTCCATCGATGACCCGCTTCACTTTCTCTCCAACTGGGAAACTTCCTCTGCCACTTTATGCAGGTGGCATGGCATCACCTGCGACAACAACGTTAACTCTTCCCACGTTAACGCTGTGATGCTCTCGGGAAAAAACATGACCGGCGAGGTCTCCTCTATTTTTCAACTTCCATACGTCGCAAACATCGACCTTTCCAATAACCAGTTTGTTGGGGAAATCACTTTTAACTACTCTCTCAATTCTCTGTCTCTACTTCGTTACCTTAACCTCAGCAACAACAACTTCACTGGTTCTTTGCCTCAACCATTGTTTTCCGTGCTTTTCTCAAACCTTGAAACTCTGGATCTCTCCAACAACATGTTTTCAGGGAACATACCTCACCAAATTGGATTGCTTTCCAGCCTAAGGTATCTTGATCTTGGAGGAAACGTTTTGGTAGGAAAGATTCCGAATTCCATCACCAACATGACCACTTTGCAGTACCTTACGTTGGCTTCAAACCAGTTAGTGGATAAGATACCACAAGAAATTGGCCAGATGAAGAGCTTGAAGTGGATTTACTTGGGCTACAACAACCTTTCAGGTGAGATACCAATTAGCATTGGAGAGTTACTCTCTTTGAATCATCTCGACCTTGTCTACAACAACCTCACTGGACCGATTCCTCAATCTCTCGGACACCTCACCGAGCTTCAATATCTCTTTCTTTATCAAAACAAACTGAGTGGTCCAATTCCCCAATCCATTTTCGAACTGAAAAAGCTCATTTCACTCGATCTAAGTGATAACTCTCTTTCGGGTTTGATTTCTGAGCGCGTGGTTCAGCTCCAGAGGCTGGAGATTCTCCACCTTTTCTCAAACAACTTCACTGGGAAGATTCCAAAGGGTGTTGCATTTTTGCCTCGGCTCCAGGTCCTTCAGCTATGGTCAAATGGATTAATAGGTGAGATTCCTGAGGAGCTTGGAAAACATAGCAACCTCACTGTGTTGGACCTCTCCACCAACAACCTCGCAGGGAAGATTCCAGATAACATATGCCACTCAGGTAGTCTTTTCAAGCTGATCCTCTTCTCCAACTATTTCGAAGGAGAAATCCCAAAGAGCTTAACCTCTTGCAGAAGCCTTCGCCGAGTGAGACTACAAAACAACAAGTTCTCGGGGAAATTACCACCGGAATTAACCACACTGCCTCAGGTATATTTCTTGGATATCTCTGGAAACCAACTTTCCGGAAGGATCAATGACAGAAAATGGAACATGCCGTCGCTTCAAATGCTCAGTTTGACCAACAACAACTTCTCAGGAGAACTCCCTACCTCTTTCGGGACACAAATTCTTGAGGACTTGGACTTATCAAACAACCAATTCTCAGGTTCTATTCCTCTAGATTATAAAAGCTTATCAGAGCTGGTGGAATTGAAGCTCAGCTATAACAAACTCTTCGGTAACATTCCAGAAGAAATTTGCTCGTGCAAGAAGCTTGTGGCCTTAGATTTGAGTCACAACCAGCTCAGTGGTGAAATTCCAATGAAATTCTCGGAGATGCCGGTTCTCGGTCTCCTTGACCTGTCAGAAAACCAATTCTCCGGCGAGATTCCGCAGGATTTGGGGAGCGCCGAGTCTCTCGTTCAGATCAACATTTCACACAACCATTTTCGTGGAAGTTTACCTTCTACCGGTGCTTTCCTCGCCATCAACGCCAGTGCAATCACCGGCAACAACCTTTGTGACCGTGATGAAGACTCTTCAAGCGGGTTGCCACTGTGCAAAAGCAATAACCAGAACCCAACTTGGCTCTTCGTCATGCTGTGTTTTCTACTAACACTGGTTGCGTTCGCAGGAGCTTCTTTACTCGTCTTTTATGTTCACAAGAGAAAGAGCTTCTCGGAAGTGCGAAAAGTGGAAAACCAAGACGGAACCTGGGAAGTGCAGTTCTTTTGTGACAAAGCAGCGAAGTTGATGAAGGTAGAAAACGTTTTCTCTACGGTTAAAGAGGGAAGAGTCGTGTCCAAAGGAAGGAACTGGGTTTCCTACGAAGGGAAGTGCATGGAGAATGGCATGCAGTTCACGGTGATGGAAATCAGTGAGTTGAATTCTCTTTCGACGAGTATGTGGGAAGAAACAGTGAAGGGTGGAAAGGTTCGTCACCCCAATATCTTCAATCTTGTTGGGACGTGTAGGTGTGGGAAGAGAGGGTACTTGGTGTACGAACACGAAGAGGGTAAGAAACTAAGCGAGATTGTGAACAGTTTGAGTTGGAAAGAGCGTTGCAAGATTGCTGTTGGCGTTGCAAAAGCGATTAAATTCCTGCATTCTCACGCTTCATCCATGGTTTTGGTGGGAGAGGTTGCAAGGGAGATAGTTAGGGTCGACATCAAAGGTGTCCCTCGCCTTAAGGTCACCCCTCCCATAATGACATGTTTGGATATCAAGGGTATCACTTCTTCGACATACCTTGCCCAAGAGGCAAGAGAAAGGAAAAATGTGACAGAGAAGAGTGAGATATATGGGTTGGGAGTTATGCTGATTGAACTATTGACGGGAAGGAGCGGCATAGACATAGAAGGAGGAAATGGCATGCACAAGACTATTGTGGAGTGGGCCCGATATTGCTACTCTGATTGTCATGTTGACACGTGGATTGATCCTGTGATGAAAGGTGGAGATGCATTGAGGGATGAGAAAGACATGGTTGAGATGATGAATCTAGCGCTGCACTGTACCACAACCGATCCCACTGCAAGGCCATGCGCAAGAGATGTAGTGAAAGCCCTAGAGAGTTTTCAGAGAACTAGTTTTTGTTGA 2928 0.4505 MAKGSSETKSMTFICLFLFMLNFHSSHGDPKEVQILLSFKASIDDPLHFLSNWETSSATLCRWHGITCDNNVNSSHVNAVMLSGKNMTGEVSSIFQLPYVANIDLSNNQFVGEITFNYSLNSLSLLRYLNLSNNNFTGSLPQPLFSVLFSNLETLDLSNNMFSGNIPHQIGLLSSLRYLDLGGNVLVGKIPNSITNMTTLQYLTLASNQLVDKIPQEIGQMKSLKWIYLGYNNLSGEIPISIGELLSLNHLDLVYNNLTGPIPQSLGHLTELQYLFLYQNKLSGPIPQSIFELKKLISLDLSDNSLSGLISERVVQLQRLEILHLFSNNFTGKIPKGVAFLPRLQVLQLWSNGLIGEIPEELGKHSNLTVLDLSTNNLAGKIPDNICHSGSLFKLILFSNYFEGEIPKSLTSCRSLRRVRLQNNKFSGKLPPELTTLPQVYFLDISGNQLSGRINDRKWNMPSLQMLSLTNNNFSGELPTSFGTQILEDLDLSNNQFSGSIPLDYKSLSELVELKLSYNKLFGNIPEEICSCKKLVALDLSHNQLSGEIPMKFSEMPVLGLLDLSENQFSGEIPQDLGSAESLVQINISHNHFRGSLPSTGAFLAINASAITGNNLCDRDEDSSSGLPLCKSNNQNPTWLFVMLCFLLTLVAFAGASLLVFYVHKRKSFSEVRKVENQDGTWEVQFFCDKAAKLMKVENVFSTVKEGRVVSKGRNWVSYEGKCMENGMQFTVMEISELNSLSTSMWEETVKGGKVRHPNIFNLVGTCRCGKRGYLVYEHEEGKKLSEIVNSLSWKERCKIAVGVAKAIKFLHSHASSMVLVGEVAREIVRVDIKGVPRLKVTPPIMTCLDIKGITSSTYLAQEARERKNVTEKSEIYGLGVMLIELLTGRSGIDIEGGNGMHKTIVEWARYCYSDCHVDTWIDPVMKGGDALRDEKDMVEMMNLALHCTTTDPTARPCARDVVKALESFQRTSFC 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01801 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 31 147 - -
Vian4g01801 975 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 392 967 - -
Vian4g01801 975 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vian4g01801 975 SUPERFAMILY L domain-like 43 359 - -
Vian4g01801 975 PRINTS Leucine-rich repeat signature 296 309 - -
Vian4g01801 975 PRINTS Leucine-rich repeat signature 508 521 - -
Vian4g01801 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 668 779 - -
Vian4g01801 975 SMART LRR_typ_2 508 532 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 341 365 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 123 147 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 269 293 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 149 173 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 461 484 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 366 389 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 197 221 IPR003591 -
Vian4g01801 975 SMART LRR_typ_2 556 580 IPR003591 -
Vian4g01801 975 FunFam Leucine-rich repeat receptor protein kinase EMS1 240 324 - -
Vian4g01801 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 325 626 - -
Vian4g01801 975 SUPERFAMILY Protein kinase-like (PK-like) 704 971 IPR011009 -
Vian4g01801 975 Gene3D Ribonuclease Inhibitor 190 289 IPR032675 -
Vian4g01801 975 Gene3D Ribonuclease Inhibitor 29 189 IPR032675 -
Vian4g01801 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 148 239 - -
Vian4g01801 975 Gene3D Ribonuclease Inhibitor 293 625 IPR032675 -
Vian4g01801 975 Pfam Protein tyrosine and serine/threonine kinase 740 966 IPR001245 GO:0004672|GO:0006468
Vian4g01801 975 SMART LRR_sd22_2 269 295 - -
Vian4g01801 975 SMART LRR_sd22_2 508 527 - -
Vian4g01801 975 SMART LRR_sd22_2 365 388 - -
Vian4g01801 975 SMART LRR_sd22_2 173 199 - -
Vian4g01801 975 SMART LRR_sd22_2 149 168 - -
Vian4g01801 975 Pfam Leucine Rich repeat 531 548 IPR001611 GO:0005515
Vian4g01801 975 SUPERFAMILY L domain-like 316 624 - -
Vian4g01801 975 Pfam Leucine rich repeat 223 282 IPR001611 GO:0005515
Vian4g01801 975 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Vian4g01801 975 Pfam Leucine rich repeat 342 401 IPR001611 GO:0005515
Vian4g01801 975 ProSiteProfiles Protein kinase domain profile. 658 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01801 975 Gene3D Transferase(Phosphotransferase) domain 1 781 974 - -
Vian4g01801 975 SMART serkin_6 662 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01801 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 780 975 - -
Vian4g01801 975 Gene3D Phosphorylase Kinase; domain 1 665 779 - -
Vian4g01801 975 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01801 Vian-Chr4 34281504 34284591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01801 16 967 Receptor kinase-like Gene Family AT2G25790 51.402 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Vian4g01801 PK_Tyr_Ser-Thr 1.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01801 - - gmx:100777118 1620.14