Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01790 ATGTCGAGCATTTCCTTGAAGGAGAACGGTGGTGAGGTTTCTGCCACGAAGGATTATAGCAATGGTGGGGGTGTGAGGGACTTGTATGGTGAGGATAGCGCCACTGAGGACCATCTCATCACTCCATGGACCTTCTCTGTGGCCAGTGGATACAGTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCCTTTACTGAGGGAGAGAGAGATGCTCATTACTTGCGTGGCCTTTTGCCCCCAGCTGTTCTCAATCAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCATGATGGATCTCCAGGAGAGGAATGAAAGGCTATTCTACAGGCTTCTGATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACGGTTGGAGAAGCGTGTCAGAAATACGGCAGCATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAAGAAAAGGGCAAGATCCTTGAAGTACTAAAAAACTGGCCAGAAAAGAGTATTCAAGTTATTGTTGTGACTGATGGTGAGCGTATATTAGGACTTGGAGATCTTGGCTGCCAGTGCTTGCCTATTACCATTGATGTTGGCACAAACAACGAGAAGTTGCTGAATGATGAGTTTTACATTGGGCTTAGACAAAGGCGTGCAACTGGGAAGGAATATGCGGAGCTTCTAGACGAGTTTATGCGTGCAGTTAAGCAGAACTATGGAGAGAAAGTTCTCATACAGTTTGAGGATTTTGCCAATCATAATGCATTTGATCTGCTGGAAAAATACAGTTCATCTCATCTTGTTTTTAACGATGATATCCAGGGCACGGCATCTGTTGTGTTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAGCCTTAGCTGACCACACCTTCTTGTTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATTGCTCTTGAGATTTCAAAGCAGACAAATGCTCCAGTGGAAGAGACCCGAAAGAAGATCTGGCTTGTGGATTCAAAGGGACTTATTGTTAGCTCTCGTCTGGAATCACTTCAGCACTTCAAAAAGCCTTGGGCACATGCGCATAAACCTGTGAAGGGGCTACTAGATGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAGGTGGTTGAAACCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCTCTCTCCAATCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTACGCATGGAGCAAGGGTAAAGCAATCTTTGCTAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAACTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGTTTTGGCTTGGGTTTGATCATCTCTGGTGCAATCCGTGTGCGTGATGAGATGCTCCTGGCAGCCTCCGAAGCTTTGGCTGCACAAGTATCAGAGGAGAACTATGACAAGGGACTGATTTACCCTCCATTCTCAAACATCAGGAAGATATCAGCCCACATTGCGGCTAAAGTGGCGGCTAAGGCATATGATCTAGGTTTGGCTTCTCATCTGCCTCGACCAAAGGATCTTGTTAAATATGCAGAAAGTTGCATGTACAGCCCCGGCTACCGAAGCTACCGTTGA 1704 0.4619 MSSISLKENGGEVSATKDYSNGGGVRDLYGEDSATEDHLITPWTFSVASGYSLLRDPRYNKGLAFTEGERDAHYLRGLLPPAVLNQELQEKRLMHNLRQYEVPLHRYMAMMDLQERNERLFYRLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQCLPITIDVGTNNEKLLNDEFYIGLRQRRATGKEYAELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLEKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGALADHTFLFLGAGEAGTGIAELIALEISKQTNAPVEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHAHKPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVETMASLNEKPLILALSNPTSQSECTAEEAYAWSKGKAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFSNIRKISAHIAAKVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01790 567 PIRSF ME 199 567 IPR001891 GO:0004470|GO:0004471
Vian4g01790 567 PIRSF ME 13 200 IPR001891 GO:0004470|GO:0004471
Vian4g01790 567 ProSitePatterns Malic enzymes signature. 279 295 IPR015884 GO:0004471
Vian4g01790 567 FunFam Malic enzyme 281 567 - -
Vian4g01790 567 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 29 282 IPR046346 -
Vian4g01790 567 Pfam Malic enzyme, NAD binding domain 283 535 IPR012302 GO:0051287
Vian4g01790 567 MobiDBLite consensus disorder prediction 1 24 - -
Vian4g01790 567 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 283 566 IPR036291 -
Vian4g01790 567 SMART Malic_M_2 283 536 IPR012302 GO:0051287
Vian4g01790 567 CDD NAD_bind_1_malic_enz 283 561 - -
Vian4g01790 567 Gene3D - 200 280 IPR037062 GO:0004471
Vian4g01790 567 PRINTS Malic enzyme signature 180 209 IPR001891 GO:0004470|GO:0004471
Vian4g01790 567 PRINTS Malic enzyme signature 413 429 IPR001891 GO:0004470|GO:0004471
Vian4g01790 567 PRINTS Malic enzyme signature 120 144 IPR001891 GO:0004470|GO:0004471
Vian4g01790 567 MobiDBLite consensus disorder prediction 1 16 - -
Vian4g01790 567 PANTHER MALIC ENZYME-RELATED 200 567 - -
Vian4g01790 567 Gene3D - 281 567 - -
Vian4g01790 567 Gene3D - 48 199 IPR037062 GO:0004471
Vian4g01790 567 SMART malic_2 114 273 IPR012301 GO:0004471
Vian4g01790 567 Pfam Malic enzyme, N-terminal domain 114 200 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01790 Vian-Chr4 34165389 34169466 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01790 4 34165389 34169466 Vian4g01790 4 34165389 34169466 ECH
Vian4g01790 4 34165389 34169466 Vian9g00197 9 1613103 1617973 ECH
Vian4g01790 4 34165389 34169466 Vian11g00194 11 1755639 1760479 ECH
Vian1g04015 1 63227338 63231900 Vian4g01790 4 34165389 34169466 ECH
Vian9g00197 9 1613103 1617973 Vian4g01790 4 34165389 34169466 ECH
Vian11g00194 11 1755639 1760479 Vian4g01790 4 34165389 34169466 ECH