Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01782 ATGCCTTGTAAGACAACAGAAGAAAGGCAAATTCGTGATAAAAAAGCATTCCTTCTCCACACCTTATTTGTTGATGTTGCCATTTTCAGAGCTATTAAGCCTGTTAAACATGTAATGGAAGAGTCCGATGTACACAATTCTCCTACAGAAAATGGTATTCATTTCACCGAGAGAGTAGGTGACTTGAGTATTAGAGTCATGAAGGATGCGTCTGTCGCTAACTGCAAGGTTGATTCAAAAATTGATGGAGTTGAAACTACTCGAATAAATCAAAAGGATCTAATAGAGAGGAATCTACGGAAAGGAATTATTGCTGATGAGAATACTACAGCCCATATGGTGGTTCCAAGGCACTCAACATTAACAGGAAAACCACCTCATGGATCCATAACCGATTGGATCATGCACGAGTATCGCCTCCTCAACGCTCTGTCTCAGGTTCCCATGGAAAACTGGGTTCTGTGTCGGATATTTTTGAATAGGAGAAGTGGTTGTAGAAACGGGGAGGAGAAGGAGATGGAGAGTTTGAGAGGCGGAGTGGATAATAGGAAGGTGAGGAAGTCGAAGATGGTTTTCTATAACTTTTTGGCAGAGCAAGACCGATTCCTCATCTTCTGTCGGTAG 624 0.4199 MPCKTTEERQIRDKKAFLLHTLFVDVAIFRAIKPVKHVMEESDVHNSPTENGIHFTERVGDLSIRVMKDASVANCKVDSKIDGVETTRINQKDLIERNLRKGIIADENTTAHMVVPRHSTLTGKPPHGSITDWIMHEYRLLNALSQVPMENWVLCRIFLNRRSGCRNGEEKEMESLRGGVDNRKVRKSKMVFYNFLAEQDRFLIFCR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01782 207 Gene3D NAC domain 90 165 IPR036093 GO:0003677|GO:0006355
Vian4g01782 207 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 114 IPR027523 GO:0006996
Vian4g01782 207 SUPERFAMILY NAC domain 122 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01782 Vian-Chr4 34090243 34092560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01782 123 167 NAC Transcription Factor Family AT5G13180 63.830 9.15e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01782 K03255 - gmx:100784117 170.244