Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01780 ATGGCCATCGCAACAGAGACTCAGCCTCAACAACACAAGGATTCTTACGAGTTGTCGGGTTCAGCTGCGGAGAGGAGGTGGACGCTGAACGATTTCGAGGTTGGAAAGCCTCTTGGAAGGGGGAAATTCGGTCACGTCTATTTGGCAAGAGAGAAGAGTAGTAATCACATTGTTGCTTTGAAAGTACTCTTTAAGAGCCAATTGCAGCAATCCCAAGTTGTGCATCAACTTCGGCGAGAAGTTGAGATTCAAAGTCATCTCCGACATCCCCACATCTTGCGCCTCTATGGGTACTTTTATGACCAGAAAAGAGTGTATTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAAAAGTGCAAGTATTTCAGTGAAAGGCGTGCAGCTACTCAGTATGTTGCGTCATTGGCTCGGGCCCTAATATATTGCCATGGAAAACATGTAATCCACAGGGATATTAAACCAGAAAACCTTCTTGTTGGTGCACAGGGTGAGCTAAAAATAGCGGACTTTGGGTGGTCAGTGCACACATTTAATCGCAGGCGGACAATGTGTGGCACACTGGATTACCTTCCTCCCGAGATGGTGGAGAGTGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTGCTGTGTTATGAGTTTCTTTATGGGGTCCCTCCCTTTGAGGCTAAAGAACACTCGGATACTTACAGGAGGATAGTACATGTGGATCTTAAGTTCCCTCCTAAACCAATTGTATCCTCTGGTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTCATCCCAACGGTTACCATTGCACAAGCTCCTTGATCACCCTTGGATTGTTCAGAATGCAGAGCCCTCTGGTGTATATAGGGGCTAG 891 0.459 MAIATETQPQQHKDSYELSGSAAERRWTLNDFEVGKPLGRGKFGHVYLAREKSSNHIVALKVLFKSQLQQSQVVHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATQYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVHVDLKFPPKPIVSSGAKDLISQMLVKDSSQRLPLHKLLDHPWIVQNAEPSGVYRG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01780 296 FunFam serine/threonine-protein kinase Aurora-1 116 292 - -
Vian4g01780 296 Gene3D Transferase(Phosphotransferase) domain 1 116 292 - -
Vian4g01780 296 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Vian4g01780 296 PIRSF ILK 4 281 - -
Vian4g01780 296 Gene3D Phosphorylase Kinase; domain 1 20 115 - -
Vian4g01780 296 SMART serkin_6 32 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01780 296 CDD STKc_Aurora 31 285 - -
Vian4g01780 296 Pfam Protein kinase domain 32 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01780 296 ProSiteProfiles Protein kinase domain profile. 32 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01780 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vian4g01780 296 FunFam Aurora kinase A 24 115 - -
Vian4g01780 296 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 295 IPR030616 GO:0004672
Vian4g01780 296 SUPERFAMILY Protein kinase-like (PK-like) 19 288 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01780 Vian-Chr4 34070178 34072579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01780 24 295 CBL-interacting serine-threonine protein kinases AT5G10930 35.484 1.96e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vian4g01780 Pkinase 9.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01780 K08850 - gmx:100775451 570.466