Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01762 ATGAACCACCATCATCCCTTCATCACCCTCTTCTCTACTATACTATTAGTTTCCACCACCACCACCACCACCACCACCACCCTGTCACTCTCCCAGGTTATCATCACCAGTACCACCACCAAGAACCAGTCACAGTTTTTCTTTCTCATGAAACTCTCCCTCCCCGGAAAGTACCCCATGAATTGGGACGCTGGAAAACCAGTGTGCAGCTTCACCGGAGTTACCTGCAACACCAAAGGTGACGTTATCGGCCTCGACCTTTCAGGTTGGTCATCACTTACTGGAAAGTTCCCGGAAGATACATGCTCTTACCTCCCACAGTTACGTGTTCTCCGCCTCGGCCACACCAGGTTCAAGTTCAACGTAGGCACCATCCTCAACTGTTCCCACTTGGAAGAGCTTAACATGAACCACATGTCCCAGACCGGCACGCTCCCAGATTTCTCTTCCTTGAAATCTCTGAGGATTCTCGATTTGTCCTACAACGTCTTCACAGGCCAATTCCCCATGTCAGTGTTCAACCTCACCAACCTCGAGGTGCTAAACTTCAATGAAAACGGAGGCTTCAACCTGTGGCAGTTACCCGCAGATATTGACAGGTTGAAACACCTCAAGTCCATGGTTCTCACGACGTGCATGGTGCATGGTCAAATCCCTGCGTCCATAGGGAACATAACTTCCCTCATCGATCTTGAGCTGAGTGGGAATTTCCTCACGGGACAAATTCCGAAAGAGCTTGGTCAGCTGAAGAACCTTCAACAGCTTGAGCTTTACTATAACTACCATCTCGTTGGGAACATTCCAGAGGAGTTGGGGAACCTCACGGAGCTCGTGGATTTGGATATGTCAGTGAACAAGTTTACCGGGAGCATCCCTGCATCGGTTTGTAGGCTTCCCAAGCTTCAAGTCTTGCAGCTCTACAACAACAGCCTCACAGGTGAAATCCCAGGTGCGATCGAAAACTCAACAGCTTTAAGAATGCTGTCTCTGTACGACAACTTCCTTGTAGGACAGGTTCCCAAGAAACTGGGACAGTTCTCTGGAATGTTAGTTCTTGACTTGTCGGAGAATAAATTTTCTGGTCCGTTGCCAACCGAGGTTTGCAAGGGTGGTACGCTAGAGTACTTTCTCGTTCTGGATAACATGTTTTCTGGAGAGATACCACAGAGTTATGCGAACTGCATGATGCTGTTGAGGTTTAGAGTGAGTAACAACCGTTTGGAGGGTTCCATTCCCGCGGGACTCCTTGGTTTACCACACGTTTCAATCATTGATGTGAGTAACAATAACTTGAATGGTCCAATTCCTGAGATTAACGGGAATTCTAGAAACCTGTCTGAACTGTTCCTTCAGAGGAACAAAATTTCAGGTGTCATAACTCCCACAATATCTCGAGCCATTAGTCTGGTCAAAATAGATTTCAGTTACAACCTTCTATCTGGTCCAATCCCTTCCGAAATTGGCAACCTCAGAAGGCTCAATTTGCTTATGTTGCAAGGGAACAAGCTGAATTCTTCCATCCCTGGTTCACTCTCTTCATTAGAGTCTCTCAACCTTCTTGATCTCTCCAACAATCTTTTAACTGGGAGCATCCCTGAAAGCCTCTCTGTGCTGCTACCAAACTCTATTAACTTCTCGCACAATATGCTTTCGGGTCCAATTCCTCCCAAACTGATCAAAGGAGGCTTGGTGGAAAGTTTTGCAGGGAATCCTGGTTTGTGTGTGCTACCGGTGTATGCCAATTCATCGGATCGAAACTTCCCCATATGTCCAAGTGCCTACAAGAGCAAGAGGATCAACACCATCTGGATAGCTGGGGTGTCAGTGGTTTTGATCTTTATTGGGTCTGCCTTGTTTCTCAAACGTAGGTGCAGCAAAGACACCGCTGCAGTGGAACATGAGGAGACACTGTCTTCGTCGGTTTTCTCTTATGATGTTAAGAGCTTCCACAAGATCTCTTTCGACCAAAGGGAGATCATTGAGTCCTTGGTGGACAAGAACATAATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTGGCAGTGAAGAGGCTGTGGAGTCGCAAGTCCAAGGATTCGACTCCAGAGGATCGGTTGTTTGTGGACAAGGCATTGAAGGCAGAGGTGGAGACCTTAGGAAGCATAAGACACAAGAACATAGTGAAACTATACTGCTGCTTCTCCAGTTTCGAGTGCAGCTTGTTGGTTTATGAGTACATGCCAAATGGTAATCTTTGGGATTCCCTGCACAAGGGTTGGACCCTTTTGGATTGGCCTACTCGTTATAGAATTGCACTGGGAATTGCACAGGGTTTATCATACCTTCACCATGATTTGCTTCTTCCTATTATCCATCGAGACATCAAGTCAACCAATATACTGTTGGATGTTGATTACCAGCCCAGGGTTGCAGACTTTGGGATTGCCAAGGTTTTGCAAGCAAGAGGAGTGAAGGATTCCACCACAACTGTCATTGCAGGAACATATGGTTACTTAGCCCCAGAATTTGCATATTCATCAAGGGCCACCACCAAGTGCGACGTCTACAGTTTTGGGGTGATTTTGATGGAGCTGTTAACTGGGAAGAAGCCCGTGGAGGCAGAGTTTGGAGAGAACAGAAACATTGTTTTCTGGGTTTCCAACAAAGTAGAAGGCAAGGAGGGGGCAAGACCAAGTGAAGTTTTTGATCCGAGGTTATCATGTTCATTCAAGGATGACATGATCAAAGTGTTGCGGATTGCCATTCGCTGCACCTACAAAGCCCCAACAAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAGGCAGAGCCACGCGGTTCCGACTCTTGCAAGTTGTCAACCAAAGATGTTTCAAATGTCACCGTAGTAAAGAAACCATATGAATTATAA 2922 0.4658 MNHHHPFITLFSTILLVSTTTTTTTTTLSLSQVIITSTTTKNQSQFFFLMKLSLPGKYPMNWDAGKPVCSFTGVTCNTKGDVIGLDLSGWSSLTGKFPEDTCSYLPQLRVLRLGHTRFKFNVGTILNCSHLEELNMNHMSQTGTLPDFSSLKSLRILDLSYNVFTGQFPMSVFNLTNLEVLNFNENGGFNLWQLPADIDRLKHLKSMVLTTCMVHGQIPASIGNITSLIDLELSGNFLTGQIPKELGQLKNLQQLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPASVCRLPKLQVLQLYNNSLTGEIPGAIENSTALRMLSLYDNFLVGQVPKKLGQFSGMLVLDLSENKFSGPLPTEVCKGGTLEYFLVLDNMFSGEIPQSYANCMMLLRFRVSNNRLEGSIPAGLLGLPHVSIIDVSNNNLNGPIPEINGNSRNLSELFLQRNKISGVITPTISRAISLVKIDFSYNLLSGPIPSEIGNLRRLNLLMLQGNKLNSSIPGSLSSLESLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNMLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDRNFPICPSAYKSKRINTIWIAGVSVVLIFIGSALFLKRRCSKDTAAVEHEETLSSSVFSYDVKSFHKISFDQREIIESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSRKSKDSTPEDRLFVDKALKAEVETLGSIRHKNIVKLYCCFSSFECSLLVYEYMPNGNLWDSLHKGWTLLDWPTRYRIALGIAQGLSYLHHDLLLPIIHRDIKSTNILLDVDYQPRVADFGIAKVLQARGVKDSTTTVIAGTYGYLAPEFAYSSRATTKCDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDPRLSCSFKDDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIEAEPRGSDSCKLSTKDVSNVTVVKKPYEL 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01762 973 FunFam receptor protein-tyrosine kinase CEPR1 646 747 - -
Vian4g01762 973 SMART serkin_6 663 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01762 973 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 748 961 - -
Vian4g01762 973 Gene3D Transferase(Phosphotransferase) domain 1 748 967 - -
Vian4g01762 973 Gene3D Ribonuclease Inhibitor 299 584 IPR032675 -
Vian4g01762 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Vian4g01762 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 233 - -
Vian4g01762 973 Gene3D Ribonuclease Inhibitor 44 189 IPR032675 -
Vian4g01762 973 Pfam Protein kinase domain 665 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01762 973 FunFam Leucine-rich repeat receptor-like protein kinase 191 294 - -
Vian4g01762 973 Gene3D Phosphorylase Kinase; domain 1 646 747 - -
Vian4g01762 973 SUPERFAMILY RNI-like 265 584 - -
Vian4g01762 973 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01762 973 FunFam Receptor protein-tyrosine kinase CEPR1 298 584 - -
Vian4g01762 973 SUPERFAMILY Protein kinase-like (PK-like) 649 943 IPR011009 -
Vian4g01762 973 SUPERFAMILY L domain-like 43 364 - -
Vian4g01762 973 Gene3D Ribonuclease Inhibitor 190 293 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01762 Vian-Chr4 33869115 33872542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01762 39 950 Receptor kinase-like Gene Family AT5G49660 64.527 0.0 1201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian4g01762 Pkinase 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01762 - - gmx:100785822 1711.04