Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01761 ATGGTTGTCGCCTATCTTCTCCCTCTTCACCTTTTCTCTTCCCATACCCAAATTGGAAATTGTTGTACCCTCTATGTTGCTGCCACGGCGACGCCGTACCGGTCCACCGGACGCCAATGCCGCCACGGTGACCCAACTCATTTCTTCGTGTACCAAAAATCGGTTTCCTCACACAGCCCAACCCATGCAGTTGCTAAGAACCAGTTCCCTCACGCAATGGAGTTGCACCCTACGCTGCATAATCACCCTAAACATCAGTTTCCTCAAATCCTTACTTGCAGTCATGCTCAAATTGACTCGGAGACTCATCTTTCACACTTTCCAAACATGTCCGCCGCCTTTCGCCTCCTGCTTCTTCTCTCACTCTTCTCTCTACTCACCGCCCAACAGCACGACCAGCGTCAAATCCTTCTCAACCTAAAATCCTCTCTCAAGAGTTCAAATTTTTCAAAACTCTTTGACTCATGGAATGACACCAACTCCGTTTGCAGTTTCAACGGAGTAATTTGCAACACCCTCCGTTCGGTCACCGAAATCAACCTCTCCAACCAAAATCTGACTGGGGTTCTTCCCTTTGACTCTCTCTGCAACCTTCCATCGCTCCAGAAACTCGCGTTCGGCTACAACGGCTTGTATGGCAATGTTTCAGAGGACATTAGAAAATGCGTCACCTTGCGCTACTTGGATTTGGGAAACAACCTTTTCTCTGGTCCCTTCCCCGACATATCTCCTCTTAATCAGTTGGAGTATTTGTTTTTAAACAAAAGTGGATTTTCGGGCACTTTTCCGTGGCAGTCGCTGTTAAACATGACGGGTCTGTTGCAGTTAAGTGTCGGAGATAACCCTTTCGATTTCACGCCGTTTCCAAAAGAGGTTGTGAGTCTCAAGAAGCTGAATTGGCTCTACCTACTCGAAGGGGATCTTTCTGAATTGAAGTACTTGACCAATCTGGTTTCGCTTCAATTTTTTGAGAACAATTTGTCAGGGGAGATTCCTGATGAAATTGGCGAATTCAAAGGCCTCAAGTCCCTGTCTCTGTACAGGAACAAATTGACAGGTCCTATTCCTCAGAAGGTTGGTTCCTGGGCTGAGTTTGATTTCATCGATGTGTCGGAGAATTTTTTGTCGGGGACTATTCCGCCGGAAATGTGTAAAAAGGGGAAGATGACCGCACTGCTCGTGCTTCAGAACAATCTCTCCGGCGAGATTCCGGCCACCTATGGAGACTGTTGGAGTATGAAGCGATTCAGAGTCAGCAATAACTCGCTCTCGGGTACCGTGCCACCGGCGATTTGGGGATTGCCCAACGCCGAAATAATCGATATTGAACTGAATCAGTTCGAAGGTTCGGTTGCTTCGGATATCAGAAACGCCAAAACATTAGGTTCAATATTAGCTAGGCAAAATCGGTTGTCCGGTGAAATACCCGATGAAATCTCCAAAGCAACGTCGTTGGTGACTTTGGACCTGAGCGAGAATCAGATTTCGGGGAAGATTCCAGAAGGAATCGGGGAGCTTAAAGAACTAGGTAGTCTTCATTTGCAGAACAATAGGTTATCAGGTTCGATACCGGAATCTCTCGGTTCCTGCAAATCCCTCAACGACATTGACCTATCGAGGAATTTACTCTCTGGAGAAATCCCCACCTCGTTGGGTTCTTTCCCCGCGCTGAATTCTCTGAATCTTTCAGACAACGATCTCTCTGGTGAAATTCCTGGGGGTTTGGCGTTCCTCAGGTTAAGCCTCTTTGATCTATCGTACAACCGATTAACGGGTAAAATTCCTCAGGCTCTAACCCTCGAAGCTTACAACGGAAGCCTCTCCGGAAACCCCGGTTTGTGCAGCATCGACGCCATCAACTCCTTTCCTCGTTGCTCTTCTTCCTCTGGCATTTCGAAGGACATGCGTGATCTCGTAATTTGCTTCGCGATAGCGTCGATATTATTGCTTTCGTGTTTGGGCGTTTACTTGCAGCTGAAGAGGAGGAAGGAAGAGGGAGAAAGATTCGGAGAACGTTCCTTGAAGGAAGAATCCTGGGACGTGAAATCGTTCCACGTGTTAAGTTTCTCGGAGGGGGAGATTCTAGATTCCATCAAGCAGGAGAATCTGATAGGAAAGGGAGGTTCAGGGAACGTGTACAGAGTCACGCTTTCCAACGGAAAAGAGCTGGCGGTGAAACATATTTGGAACACCGATGTACCCGCGCGGAAAAAGTCGTGGAGCAGCACTCCCATGCTTGGGAATAAGCAGGGTGGGAGGTCTAAGGAGTTCGATGCAGAGGTTCAGGCTTTGAGCTCCATAAGGCACGTGAATGTGGTGAAGCTTTATTGCAGCATAACGAGTGAAGATTCGAGCTTGTTGGTGTACGAGTATTTACCCAATGGAAGCTTGTGGGATCGGCTTCACACAAGTAGAAAGATGGAGCTTGATTGGGAAACGAGAATATGGTTATACATACAAACAGAATTTGGGGAGAATAAGGACTTGGTGAGTTGGGTCCATAACATGGCACGAAGCAAAGAGGGTCTTAGGAGTGCTGTGGATTCGAGGATTCCAGAAATGTATAAAGAGGAAGCATGCAAGGTTTTGAGAACCGCGGTTCTGTGCACGGGAACTCTTCCGGCTTTAAGACCCACCATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGAGCCTTGTAAACTGGTTGGGATTGTTATCAGCAAAGACGGTGGTGAAAAGAAAATAGGAGTGAATGAGAAGAAATAA 2748 0.4727 MVVAYLLPLHLFSSHTQIGNCCTLYVAATATPYRSTGRQCRHGDPTHFFVYQKSVSSHSPTHAVAKNQFPHAMELHPTLHNHPKHQFPQILTCSHAQIDSETHLSHFPNMSAAFRLLLLLSLFSLLTAQQHDQRQILLNLKSSLKSSNFSKLFDSWNDTNSVCSFNGVICNTLRSVTEINLSNQNLTGVLPFDSLCNLPSLQKLAFGYNGLYGNVSEDIRKCVTLRYLDLGNNLFSGPFPDISPLNQLEYLFLNKSGFSGTFPWQSLLNMTGLLQLSVGDNPFDFTPFPKEVVSLKKLNWLYLLEGDLSELKYLTNLVSLQFFENNLSGEIPDEIGEFKGLKSLSLYRNKLTGPIPQKVGSWAEFDFIDVSENFLSGTIPPEMCKKGKMTALLVLQNNLSGEIPATYGDCWSMKRFRVSNNSLSGTVPPAIWGLPNAEIIDIELNQFEGSVASDIRNAKTLGSILARQNRLSGEIPDEISKATSLVTLDLSENQISGKIPEGIGELKELGSLHLQNNRLSGSIPESLGSCKSLNDIDLSRNLLSGEIPTSLGSFPALNSLNLSDNDLSGEIPGGLAFLRLSLFDLSYNRLTGKIPQALTLEAYNGSLSGNPGLCSIDAINSFPRCSSSSGISKDMRDLVICFAIASILLLSCLGVYLQLKRRKEEGERFGERSLKEESWDVKSFHVLSFSEGEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDVPARKKSWSSTPMLGNKQGGRSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSRKMELDWETRIWLYIQTEFGENKDLVSWVHNMARSKEGLRSAVDSRIPEMYKEEACKVLRTAVLCTGTLPALRPTMRAVVQKLEDAEPCKLVGIVISKDGGEKKIGVNEKK 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01761 915 SUPERFAMILY Protein kinase-like (PK-like) 689 821 IPR011009 -
Vian4g01761 915 ProSitePatterns Protein kinases ATP-binding region signature. 704 726 IPR017441 GO:0005524
Vian4g01761 915 Gene3D Ribonuclease Inhibitor 388 630 IPR032675 -
Vian4g01761 915 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 310 817 - -
Vian4g01761 915 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 132 244 - -
Vian4g01761 915 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Vian4g01761 915 Gene3D Ribonuclease Inhibitor 130 287 IPR032675 -
Vian4g01761 915 Gene3D Transferase(Phosphotransferase) domain 1 684 822 - -
Vian4g01761 915 FunFam Receptor-like protein kinase HAIKU2 681 791 - -
Vian4g01761 915 Pfam Leucine rich repeat N-terminal domain 132 171 IPR013210 -
Vian4g01761 915 SUPERFAMILY L domain-like 308 625 - -
Vian4g01761 915 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 627 - -
Vian4g01761 915 Pfam Protein kinase domain 700 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01761 915 Gene3D Ribonuclease Inhibitor 288 386 IPR032675 -
Vian4g01761 915 ProSiteProfiles Protein kinase domain profile. 698 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01761 915 SUPERFAMILY L domain-like 156 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01761 Vian-Chr4 33840344 33845818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01761 819 907 Receptor kinase-like Gene Family AT1G09970 59.551 3.24e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian4g01761 Pkinase 3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01761 - - gmx:100779554 1015.76