Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01752 ATGGGTACTGGTTGGAGGAGAGCCTTCTGCACCCGCGACCCAGCTTCTACCATATCGGATAAACAGCCCGGAAGCCCAAGCCCAAGCCCCAGCCCGAGAAGCTGTGCCCGCTTGGGTTTTCTCTCCGGAGGGAGCAACCCTTCCACCCCACGCTTGCGGTGCACAACTACACCAGAATCTGCTTCTCAAACAGTTACTGTAAACGAAAGCCCCAGAGTTCAAAGCAAGAACACCTCCAGAACAACCAAGTCTCCCAAAACGCTTGCTGTCTCAAATCCATCTTCACCGCGTTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGTTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCTATTTACACTGCGGAATGTGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTGCGCAAACATGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAGGACGTCCCACTACTCGCGGCGCACAAGAACCTCGCTGCGCAATCCGCCACGAAAAATGACGTCGCTCAGAGGACCACCGAAAACACCAATGCCAACGTCAAAAAGCCAACAGAAAACACATCCCCCGTTTTCAAGACCTACAGCCAGGTGGAGACCCCACCCAAACATACAGATTCGGTTCGGTCCTACGACGACGACGAGCCACTCCTCTCTCCCACCTCGGGCGGAAGGATCATTCCTATTCCCGAAGCCGACGAGAATGTCGAAGAAGACGACGAAGAAGAAGACGCCGGGGAGTTCCAGGGCTTTTTCGTCAACACCAAGAACTCGTCCTCCTCCAAATCATACTCCGATTCCTTCCAAACAACTGACGGAGATTCCAGAACGGTTCAGGTGAAACTCATGCCGGAGTGCGCCGTTATCTCGGCTTCCCGAACGCACGAGACCTACGCGTTGGTGTTGAAAGTCAAGGCTCCGCCTCCACCATCTCCACCGCGGAGCAGCACGGCGCCATCGCAACGTGCGCCGATAGATCTCGTCACTGTGCTGGACGTTGGTGGAAACATGACCGGAGCGAAGCTGCACATGCTAAAGCGCGCGATGCGTTTGGTTGTCTCATCGCTTGGCCCCGCCGACAGGCTCTCAATCGTCGCTTTCTCAGCCACTTCGAAACGGCTATTGCCTCTGCGCAGAATGACGGCCCAAGGACAGCGCGTGGCTCGACGCATAGTTGACCGGCTCGTGGTAGGTCAAGGCTCGAGCGTAGGCGAGGCGTTGAGGAAGGCGACGAGAGTGTTAGAGGATCGCAGAGAGAGAAACCCGGTGGCGAGCGTGATGCTGTTATCGGACGGTCAAGAAGAGAGGGTTCAGAATCAGAGGGGTAACAGTAGTGGTCAGAGGAAGGCTTCGAGTCACGTGTCGTCGACGCGGTTCGCGCATATCGAGATTCCGGTTCACGCTTTCGGGTTCGGGGCGAAAAGCGGTTTCAGCCAGGAACCGGGGGAGGAGGCGTTCGCGAAGTGCGTGGGTGGGCTTCTGAGCGTGGTGGTGCAGGATTTGAGGATTCAAGTGGGCTTTGAGTCAGAGGCGGTGGAGATGAGCGCGATTTACTCGTGCAGTGGAAGGCCCAGTCTGCTGAGCTCAGGGGCGGTGCGGCTGGGCGACTTGTACGCGGAGGAAGAGAGGGAGCTGTTGGTGGAGTTGAGAGTTCCCGCGTCGTCAGGACATGGGACCCACCACGTGATGGCTGTACGGTGCCTCTATAAGGACCCTGCTAGCCAGGAGATCGTATACGGTAGGGAGCAGGGTCTTCTGGTGCCGCCGCCTCAGAGCCTGCGTTGTTCCGGTACTAGGATCCAGAGGCTCAGGAATCTCTTCATAACTACCCGAGCCATTGCAGAGTCCAGGAGGCTTCTTGAGCATAACGCTGACTTCACCAGCGCGCATCATTTGCTTGCCTCAGCGCGTGCACTTCTCATGCACTCCAACGCCGCTTCGGCGGATGACTACATGCGCGCCTTGGAGGCTGAGCTGGCAGAGCTTCATTGGCGAAGACAGCACGAGCAGGTTCAGGTTCAGGTTCAGCAACAGCAGCAAAGTGTGCAACAGCGGAGAAGAGGGAGTGAGAGAGAGGTGACTTTGGTGGACGAGAATGGCGAGCCGCTTACACCGACGTCGGCTTGGAGAGCCGCCGAGAAGCTGGCTAAGGTGGCGATGATGAAGAAGTCTTTGAACAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2268 0.5683 MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTTPESASQTVTVNESPRVQSKNTSRTTKSPKTLAVSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAQSATKNDVAQRTTENTNANVKKPTENTSPVFKTYSQVETPPKHTDSVRSYDDDEPLLSPTSGGRIIPIPEADENVEEDDEEEDAGEFQGFFVNTKNSSSSKSYSDSFQTTDGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPSPPRSSTAPSQRAPIDLVTVLDVGGNMTGAKLHMLKRAMRLVVSSLGPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIVDRLVVGQGSSVGEALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNSSGQRKASSHVSSTRFAHIEIPVHAFGFGAKSGFSQEPGEEAFAKCVGGLLSVVVQDLRIQVGFESEAVEMSAIYSCSGRPSLLSSGAVRLGDLYAEEERELLVELRVPASSGHGTHHVMAVRCLYKDPASQEIVYGREQGLLVPPPQSLRCSGTRIQRLRNLFITTRAIAESRRLLEHNADFTSAHHLLASARALLMHSNAASADDYMRALEAELAELHWRRQHEQVQVQVQQQQQSVQQRRRGSEREVTLVDENGEPLTPTSAWRAAEKLAKVAMMKKSLNRVSDLHGFENARF 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01752 755 MobiDBLite consensus disorder prediction 444 468 - -
Vian4g01752 755 ProSiteProfiles Zinc finger RING-type profile. 115 160 IPR001841 -
Vian4g01752 755 Pfam von Willebrand factor type A domain 343 449 IPR002035 -
Vian4g01752 755 MobiDBLite consensus disorder prediction 1 96 - -
Vian4g01752 755 SUPERFAMILY vWA-like 340 518 IPR036465 -
Vian4g01752 755 MobiDBLite consensus disorder prediction 41 96 - -
Vian4g01752 755 Gene3D von Willebrand factor, type A domain 342 512 IPR036465 -
Vian4g01752 755 SMART ring_2 115 159 IPR001841 -
Vian4g01752 755 ProSiteProfiles VWFA domain profile. 342 488 IPR002035 -
Vian4g01752 755 MobiDBLite consensus disorder prediction 181 244 - -
Vian4g01752 755 CDD RING-H2_WAVH2 112 165 - -
Vian4g01752 755 Pfam RING-like zinc finger 115 144 IPR001841 -
Vian4g01752 755 SMART VWA_4 340 529 IPR002035 -
Vian4g01752 755 MobiDBLite consensus disorder prediction 181 220 - -
Vian4g01752 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 213 IPR013083 -
Vian4g01752 755 CDD vWA_C3HC4_type 341 514 - -
Vian4g01752 755 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 114 750 - -
Vian4g01752 755 MobiDBLite consensus disorder prediction 448 468 - -
Vian4g01752 755 SUPERFAMILY RING/U-box 108 165 - -
Vian4g01752 755 MobiDBLite consensus disorder prediction 696 717 - -
Vian4g01752 755 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01752 Vian-Chr4 33700208 33702563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01752 107 262 C3H Transcription Factor Family AT3G03550 25.466 4.90e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01752 - - gmx:100782780 1192.95