Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01751 ATGTCTCCACCATTGCTGGGCATAGGAGAGGAGGAGGGTAAAAGCAATGTCACTATGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTGAAGACCTTAGAATTGAAAGAACGCAACTACATGGGGTTATCTGATTGTTCTTCTGTAGACAGCTCAGTTCCGTCTTTCTCAGAAGAGACTAAAAGTAATCTGAACCTGAAAGCCACCGAGCTCAGGCTTGGGCTTCCGGGATCACAGTCCCCTGAAAGAGATTCCGATTTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCCTTGTTTCCTTTGCGTCCTCTCACTGACGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAACAAGAGAGGGTTTTCAGATGCCATGAATGGCTTCTCGGAGGGGAAGTTCCTAATTGATTCTGAGAACAATCCTATACTATCTCCGAGGCCCGGTTCTAACTTGGGATTAAACCCTGGTTCTACACTTGAGAAGGCTGGGGCTCAGCAAATCAAAATGAAAGAAGCAGCAACAGCAAAGGAGCCTCATTCTGCCAATGAAACTAGACCAAGTATTAATTGTTCTGCAAATAACAGTAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCCCCTATAAGATCATTCAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGAAAAAGTAGGGGGTGGTGCACTGTTCGTCAAAGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTGGACTTGAATAATTACTCTACATATCCAGAATTATCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCATAAGTCAGTGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGAGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGTTGAGGATCATGAAGAGTTCCGATGCCATTGGTTTAGCTCCCAGGGCTGTTGAAAAAAGCAAAAGCAGGACCTAG 1092 0.4386 MSPPLLGIGEEEGKSNVTMLVSSSTTMESVCLKTLELKERNYMGLSDCSSVDSSVPSFSEETKSNLNLKATELRLGLPGSQSPERDSDFCLRSSTQFDEKPLFPLRPLTDDHHSSTKTAVLGNKRGFSDAMNGFSEGKFLIDSENNPILSPRPGSNLGLNPGSTLEKAGAQQIKMKEAATAKEPHSANETRPSINCSANNSNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDEKVGGGALFVKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01751 363 MobiDBLite consensus disorder prediction 174 210 - -
Vian4g01751 363 ProSiteProfiles PB1 domain profile. 243 345 IPR000270 GO:0005515
Vian4g01751 363 FunFam Auxin-responsive protein 238 355 - -
Vian4g01751 363 Gene3D - 239 357 - -
Vian4g01751 363 SUPERFAMILY CAD & PB1 domains 241 344 - -
Vian4g01751 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 350 IPR003311 GO:0005634|GO:0006355
Vian4g01751 363 MobiDBLite consensus disorder prediction 186 208 - -
Vian4g01751 363 Pfam AUX/IAA family 71 354 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01751 Vian-Chr4 33670367 33673914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01751 203 348 B3 DNA Binding Superfamily AT5G20730 30.128 1.50e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vian4g01751 AUX_IAA 2.1e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01751 K14484 - gmx:100783314 605.905