LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01751	ATGTCTCCACCATTGCTGGGCATAGGAGAGGAGGAGGGTAAAAGCAATGTCACTATGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTGAAGACCTTAGAATTGAAAGAACGCAACTACATGGGGTTATCTGATTGTTCTTCTGTAGACAGCTCAGTTCCGTCTTTCTCAGAAGAGACTAAAAGTAATCTGAACCTGAAAGCCACCGAGCTCAGGCTTGGGCTTCCGGGATCACAGTCCCCTGAAAGAGATTCCGATTTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCCTTGTTTCCTTTGCGTCCTCTCACTGACGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAACAAGAGAGGGTTTTCAGATGCCATGAATGGCTTCTCGGAGGGGAAGTTCCTAATTGATTCTGAGAACAATCCTATACTATCTCCGAGGCCCGGTTCTAACTTGGGATTAAACCCTGGTTCTACACTTGAGAAGGCTGGGGCTCAGCAAATCAAAATGAAAGAAGCAGCAACAGCAAAGGAGCCTCATTCTGCCAATGAAACTAGACCAAGTATTAATTGTTCTGCAAATAACAGTAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCCCCTATAAGATCATTCAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGAAAAAGTAGGGGGTGGTGCACTGTTCGTCAAAGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTGGACTTGAATAATTACTCTACATATCCAGAATTATCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCATAAGTCAGTGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGAGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGTTGAGGATCATGAAGAGTTCCGATGCCATTGGTTTAGCTCCCAGGGCTGTTGAAAAAAGCAAAAGCAGGACCTAG	1092	0.4386	MSPPLLGIGEEEGKSNVTMLVSSSTTMESVCLKTLELKERNYMGLSDCSSVDSSVPSFSEETKSNLNLKATELRLGLPGSQSPERDSDFCLRSSTQFDEKPLFPLRPLTDDHHSSTKTAVLGNKRGFSDAMNGFSEGKFLIDSENNPILSPRPGSNLGLNPGSTLEKAGAQQIKMKEAATAKEPHSANETRPSINCSANNSNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDEKVGGGALFVKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRT	363

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian4g01751	363	MobiDBLite	consensus disorder prediction	174	210	-	-
Vian4g01751	363	ProSiteProfiles	PB1 domain profile.	243	345	IPR000270	GO:0005515
Vian4g01751	363	FunFam	Auxin-responsive protein	238	355	-	-
Vian4g01751	363	Gene3D	-	239	357	-	-
Vian4g01751	363	SUPERFAMILY	CAD & PB1 domains	241	344	-	-
Vian4g01751	363	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	66	350	IPR003311	GO:0005634\|GO:0006355
Vian4g01751	363	MobiDBLite	consensus disorder prediction	186	208	-	-
Vian4g01751	363	Pfam	AUX/IAA family	71	354	IPR033389	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01751	Vian-Chr4	33670367	33673914	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g01751	203	348	B3 DNA Binding Superfamily	AT5G20730	30.128	1.50e-08	54.7

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX or IAA	Vian4g01751		AUX_IAA	2.1e-92	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g01751	K14484		-	gmx:100783314	605.905

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