Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01745 ATGGTGCTGAGGAAAGTGGGGAAGTATGAGATTGGGAGGACGATTGGGGAGGGAACTTTTGCGAAGGTGAAATTCGCTCAGAACACAGAAACTGGAGAGAGCGTGGCCATGAAAGTGCTCGACCGCAGCGCCATCATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATTTCCATTATGAAGCTTGTTAGGCATCCTTATGTTGTTCGCCTGTACGAGGTTCTTGCGACCCGTACTAAGATTTACATCATACTGGAGTTCATCACGGGTGGTGAATTGTTCGATAAAATTATACACCATGGTCGTCTTAGTGAAGCTGATTCTAGAAAATATTTTCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTCTTACTTGATTCTCTGGGAAATATAAAGATTTCCGATTTTGGTTTGAGTGCATTGCCTGAACAGGGAGTGAGTATCCTTCGAACTACTTGTGGGACCCCAAACTATGTAGCTCCTGAGGTACTCAGTCATAAGGGTTACAACGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTACTGGCTGGATATCTTCCCTTTGATGAGCTTGATCTAACCACCTTATATAATTGA 657 0.4399 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSAIIKHKMVDQIKREISIMKLVRHPYVVRLYEVLATRTKIYIILEFITGGELFDKIIHHGRLSEADSRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01745 218 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Vian4g01745 218 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 217 - -
Vian4g01745 218 SMART serkin_6 9 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01745 218 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Vian4g01745 218 Gene3D Transferase(Phosphotransferase) domain 1 3 218 - -
Vian4g01745 218 ProSiteProfiles Protein kinase domain profile. 9 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01745 218 Pfam Protein kinase domain 9 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01745 218 FunFam Non-specific serine/threonine protein kinase 2 218 - -
Vian4g01745 218 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vian4g01745 218 SUPERFAMILY Protein kinase-like (PK-like) 6 217 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01745 Vian-Chr4 33599950 33601885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01745 1 218 CBL-interacting serine-threonine protein kinases AT4G24400 88.532 4.05e-146 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian4g01745 Pkinase 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01745 - - gmx:100785444 423.32