Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01738 ATGGCTATGGCAGACAACAGGCGAAGAATTCTTCCTTATCCAGAAGATCGGTTACCTGGAAGATGCCAAACCTTGGGCTACGCAGAAGCTGTCCTACTAACCAATCCCAAAGACCCACATTTGCAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGCAAACAAGGATAATCGAGTTCATGGGTGGATATCTTTCAGTCCACCAGTAGGCTTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAAAATTTGACCTCACACGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGCTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGGTGGTGAATCATGGAAGAAGGTTTTCGGTCCTGTATATATTTATCTCAATTCTGCACCAGTTGGTGACGACCCACTTTGGTTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATCATTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAGCGGGGCAATGTCAGTGGCAGATTACTTGTCTTAGACAAGTACATCTGCACAGACTTAATATCAACAAATGGTGCTTATGTTGGCCTGGCCCCACCTGGAGATGCAGGCTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCGAATGAGAATGGATTTTTTACCATTAGAAATGTTCTTACACTGAATTGGGTGAACTTGTATATGAGCCTCCAAGAGATGGTCCCACATTGTGGGAAATAG 780 0.4423 MAMADNRRRILPYPEDRLPGRCQTLGYAEAVLLTNPKDPHLQGEVDDKYQYSCANKDNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSAHYAGQDLVPKIRGGESWKKVFGPVYIYLNSAPVGDDPLWLWEDAKIQMMNEVQSWPYHFPASEDFLKSDQRGNVSGRLLVLDKYICTDLISTNGAYVGLAPPGDAGSWQRECKDYQFWTRANENGFFTIRNVLTLNWVNLYMSLQEMVPHCGK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01738 259 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
Vian4g01738 259 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 242 - -
Vian4g01738 259 SUPERFAMILY Galactose mutarotase-like 38 140 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vian4g01738 259 CDD RGL4_N 15 143 - -
Vian4g01738 259 Pfam Polysaccharide lyase family 4, domain II 199 239 IPR029413 -
Vian4g01738 259 CDD RGL4_M 176 245 IPR029413 -
Vian4g01738 259 Gene3D - 31 146 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01738 Vian-Chr4 33561788 33563681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01738 1 238 Polysaccharide Lyase AT1G09910 70.588 2.91e-122 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01738 K18195 - gmx:100814185 465.307