Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01737 ATGGCTCCTGCACCCTCCCACTTCCTCCTGCTCGCTCTCCTTCTACTCCTCACATACGCAGCACACACCAGAGAAAGTCCACCTCCCACTCCCCAACGAATCATTGCACCACCGCCGCCCGACACCGACAATGACACCTCGCCGCCTTTCAGACCAGGCATAGCGGTGGTCGTATGCGTTTTGACCACCATAATCTCCCTCACATCACTCCTCCTTCTTTACATCAAACACTGCAACGGCGGCGCCATCCATAGCGGCGGGAGCTCGATTCCGTGGACGGTGGCGCCGTTCTCCGGGAGAAAGAACTCCGGCATTGACCGGACCGTAGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGGGGACAAAAGGAAGGGCTGGACTGCGCGGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTGTGCCGGTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACACAAAGCCTTTCCGCTGCCAAACTCAGCCCCAGCGCAACAGCCAGAACAACAACACGAACCAGGAACGCGCGCGGTTGAATATGGACGTGGAGAAGCAGGAGATTGGGCGGAGGCATTCGTCGGTGGGGGAGAGGGGAACGGAGGAGCAGAGTCGGAGGTGGACGACGTCGTTCAGGAGGTCGTTGGATAGCGCCACATCGAGGAAAAAGAACGAGAGCGTTGGTGTTGTTGGGTTTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGTTGTTGACGCAAGAAACGGAGAGAGAGGGAGACAGGACAAGCGCGGAACGGAGGTTGGAACACCGGATCATTTCTCACACACATTCCCAAACCCAACCATCGTCATTGCGGCAGTGTAGTGTGATTCTTGTACGACTTTGGTTGATTGAGAGTGACTCGTACATAATTCCTATAAAAGGACTTGTGTTCATCGGTTGCGTTAGAAAGATGGTATTATGCCAGAGCCACTCGCAATGTGTAGCTTCCATTGTAAAGAAAAGTAATCAGAGAGGGAGAGAGACAGGACATCTTTTGAGAAAACCTAGGCTGTAA 1137 0.5532 MAPAPSHFLLLALLLLLTYAAHTRESPPPTPQRIIAPPPPDTDNDTSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGAIHSGGSSIPWTVAPFSGRKNSGIDRTVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDTKPFRCQTQPQRNSQNNNTNQERARLNMDVEKQEIGRRHSSVGERGTEEQSRRWTTSFRRSLDSATSRKKNESVGVVGFGWFVRGRKDGMLLTQETEREGDRTSAERRLEHRIISHTHSQTQPSSLRQCSVILVRLWLIESDSYIIPIKGLVFIGCVRKMVLCQSHSQCVASIVKKSNQRGRETGHLLRKPRL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01737 378 MobiDBLite consensus disorder prediction 210 241 - -
Vian4g01737 378 FunFam RING-H2 finger protein ATL43 105 179 - -
Vian4g01737 378 CDD RING-H2_EL5-like 129 172 - -
Vian4g01737 378 MobiDBLite consensus disorder prediction 191 243 - -
Vian4g01737 378 MobiDBLite consensus disorder prediction 30 46 - -
Vian4g01737 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Vian4g01737 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 322 - -
Vian4g01737 378 SUPERFAMILY RING/U-box 115 177 - -
Vian4g01737 378 SMART ring_2 130 171 IPR001841 -
Vian4g01737 378 MobiDBLite consensus disorder prediction 191 209 - -
Vian4g01737 378 MobiDBLite consensus disorder prediction 25 47 - -
Vian4g01737 378 Pfam Ring finger domain 129 172 IPR001841 -
Vian4g01737 378 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01737 Vian-Chr4 33540298 33544390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01737 52 327 C3H Transcription Factor Family AT5G05810 49.671 4.21e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01737 K19041 - gmx:100794083 380.563