Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01720 ATGGGTTACCTCTCTTGCAATGCCCAATCCGCAATCGCCACCTGCGACCCTCACTTTAAGAAGCACAGACCCCTCCCTGCCAAACCAATCCGCCACTTCAACTACGCCGAAATCTCCGCAGCCGCTTCTGGCTTCTCCGTCGATACCTTTCTGGGCAGAGGCAGCCATGGCAGAGTCTACAAAGCTACCCTCGACGGCGGAAAGCTCCTTGCCGCCGTCAAAACAACGAAACTGGTCTCTGCTTCAAAGAACCACTCCACTAAATGCACCGGCTGCGGCAACTGCACCAGTCCAGTAGAGAACGAGATCGAGATCCTCTCTCAAGTTCCGAGCCCCCGCGTGGTGAACCTCATCGGCTTCAGCACCGACCCAAACGGTAACAAATTAATCGTCGTTGAATACATGCCCAACGGTTCGCTCCACGATCTATTACATTCCGTTAGAAAACCTCCCGGTTGGAACCGGAGGGTCCGGTTCGCGGTTCAGGTTGCGAAAGCGGTTCGCGAATTGCACTCTTCCAACCCTCCCGTTATTCACCGCGACGTTAAGTCTTCCAATGTTTTAATCGACGAGAGATGGAACGCGAGGCTCGGTGACTTTGGCCTTGCCTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCCGCGGGGACGTTAGGGTACCTCGACCCGTGCTATCTGGCGCCGGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGCTTCGGGATCTTGCTGCTGGAGATAATCAGCGGCCGGAACGCCATCGACGTCAATTATAGCCCTCCCTCTATTGTGGACTGGGCGGTGCCGCTGATCAAGCTCGGCGACTTCGCCGGACTCTGTGACCGCCGGATCGGAACGCCGACGGACCCCGCCGTGGTGCGGCAGCTCGCGGTGCTAGCTGCCAGATGCGTGAGATCGAAGGCCGAGAAGCGGCCGTCCATGGCGGAGGTTGTGGAGTGTCTGAATCTGGCAAGGAAGAGGATTCGTGCGTCCCCGGTGTTAATGTCTCTGCGGCGGCGCGTGGCGCGTATGGAGAGCGCGGTGCCGGTGGTGGCGTGGGAGGAGTGTGATGATAATAGTATTAATGACTGTGATAAGAGTGAGAAATTTGTGAGCATGGTGAAAGGTGGGAGTGGGAGCAGAAGGAAGGGGAAAGTATCCAGTGTGTGGGGTGTAGGGTATGGGAGTGAAGCGTCCAATAATAATAAAGTGATAAGGTCAAAGTCCATTGGTTCTTCTTCTGGTTCGGTCAAAGGGAGCTGGGTTAAAATGCAGCCACAGCCAACCGAGCAGGGATTTGGGAGGAGGAAGGTGAGGTTAAAAAAGTCAAAATCTTTGGGGGTTTTGCAAGGTTCTGTACTTTCACATTACAGTGAGAATAATAACAGTTATTATAGTTATAATAATAAGAAGAAGAAGAATAATGGTGATGATGTATCAGTAGTAATTGGGTGTGCAATGGCGAAGTTGGTTGTTACAGATAATTCAGAAAAGAAAATGGTGGAAAAGCCGTTAGTGAAATTGCATGATGAGAGTGGGAATGTGATTTGA 1563 0.5304 MGYLSCNAQSAIATCDPHFKKHRPLPAKPIRHFNYAEISAAASGFSVDTFLGRGSHGRVYKATLDGGKLLAAVKTTKLVSASKNHSTKCTGCGNCTSPVENEIEILSQVPSPRVVNLIGFSTDPNGNKLIVVEYMPNGSLHDLLHSVRKPPGWNRRVRFAVQVAKAVRELHSSNPPVIHRDVKSSNVLIDERWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSIVDWAVPLIKLGDFAGLCDRRIGTPTDPAVVRQLAVLAARCVRSKAEKRPSMAEVVECLNLARKRIRASPVLMSLRRRVARMESAVPVVAWEECDDNSINDCDKSEKFVSMVKGGSGSRRKGKVSSVWGVGYGSEASNNNKVIRSKSIGSSSGSVKGSWVKMQPQPTEQGFGRRKVRLKKSKSLGVLQGSVLSHYSENNNSYYSYNNKKKKNNGDDVSVVIGCAMAKLVVTDNSEKKMVEKPLVKLHDESGNVI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01720 520 ProSiteProfiles Protein kinase domain profile. 45 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01720 520 PANTHER OS01G0253100 PROTEIN 26 328 - -
Vian4g01720 520 FunFam Serine/threonine-protein kinase-like protein 135 338 - -
Vian4g01720 520 SUPERFAMILY Protein kinase-like (PK-like) 26 325 IPR011009 -
Vian4g01720 520 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Vian4g01720 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vian4g01720 520 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Vian4g01720 520 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
Vian4g01720 520 Pfam Protein tyrosine and serine/threonine kinase 48 325 IPR001245 GO:0004672|GO:0006468
Vian4g01720 520 MobiDBLite consensus disorder prediction 420 439 - -
Vian4g01720 520 SMART serkin_6 45 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01720 520 FunFam Serine/threonine-protein kinase-like protein 8 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01720 Vian-Chr4 33292394 33293956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01720 31 336 Receptor kinase-like Gene Family AT3G59420 40.514 1.11e-67 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vian4g01720 PK_Tyr_Ser-Thr 6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01720 - - gmx:100799382 742.651