Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01719 ATGGAATTTGACGACCACGAAGAGCAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGAAGAGGAAATGGGATTCTCAGTGGCGGCGCCGGTTTACGATTCCTTCGGAAACGCGGCGCCCAGGTCTAAAATGAGCGCAGCTGAGGGAGTTCCGGCCACCGTTAACTCCGGTCGCAAAGGCGGCTCCGCGGGGACGAGCAGATACAGAGAATGTCAGAAGAATCATGCCGTCAGCATCGGCGGTCACGCCGTCGATGGCTGCTGCGAGTTCTTGGCCGCAGGAGAGGACGGCACGCTGGAGGCCGTAATTTGCGCGGCCTGTAATTGCCACCGCAATTTTCACCGCAAGGAGATCGACGGCGAAATCAGCTCTTACCAACTGCGCTCGCAGCCGCAACCGCTGCATCCTCAGTATCACCACCAATTCTCCCCTTACTACCACCGCGGGCCACCACCTTCCTCCGCGGGATACCTCCACCCCCACCACCTGTTAACCACTCCGGTGTCGCAGCACCGGCCTTTGGCTCTACCACCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCGAGCGGCGGCGGAGGTGGCGGTTTTGGTGGTGGTGGCAGCGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCACGACGAAGCTGCCGTGGAACAATTCTGCGCTGAAACTTGTGTGAAGAGACACGTGCTGAAGGTCTGGATGCACAATAACAAACACACTCTAGCTAATTCAGAGCAACGTTCAGCTGGGAATGGATCGAATCACTTGAACAGCTCCACCATAATTGAGAATTCTGAACTCTCCTAA 906 0.5618 MEFDDHEEQEEEEEEEEEEEEEMGFSVAAPVYDSFGNAAPRSKMSAAEGVPATVNSGRKGGSAGTSRYRECQKNHAVSIGGHAVDGCCEFLAAGEDGTLEAVICAACNCHRNFHRKEIDGEISSYQLRSQPQPLHPQYHHQFSPYYHRGPPPSSAGYLHPHHLLTTPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGFGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTIIENSELS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01719 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
Vian4g01719 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Vian4g01719 301 Gene3D - 205 278 - -
Vian4g01719 301 MobiDBLite consensus disorder prediction 1 66 - -
Vian4g01719 301 SUPERFAMILY Homeodomain-like 202 273 IPR009057 -
Vian4g01719 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 274 - -
Vian4g01719 301 MobiDBLite consensus disorder prediction 274 301 - -
Vian4g01719 301 MobiDBLite consensus disorder prediction 1 24 - -
Vian4g01719 301 NCBIfam homeobox domain, ZF-HD class 215 271 IPR006455 -
Vian4g01719 301 Pfam ZF-HD protein dimerisation region 66 118 IPR006456 -
Vian4g01719 301 FunFam Zinc-finger homeodomain protein 2 208 276 - -
Vian4g01719 301 Coils Coil 1 23 - -
Vian4g01719 301 MobiDBLite consensus disorder prediction 178 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01719 Vian-Chr4 33276840 33278016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01719 67 274 ZF-HD Transcription Factor Family AT4G24660 56.459 3.81e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian4g01719 ZF-HD_dimer 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01719 - - pvu:PHAVU_009G037900g 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01719 4 33276840 33278016 Vian4g01719 4 33276840 33278016 ECH
Vian7g00064 7 2642132 2642905 Vian4g01719 4 33276840 33278016 PCT