Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01713 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACCGCTAGGCAAGTAACATTTTCTAAGAGAAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTTCTGTGTGATGCTGATGTTGGTCTCATAGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGTTCCAGTATGAATGACATAATTATCAAGTATAATACGCATTCCCCTGGCATGGACAAATTGGACAGGCCATCACTAGAAATGCAGCTAGAGACTGCCACTAAATTGAGTAAGGAAATTGCAGAGAGAACCCAAGAACTAAGTTGGATGAAAGGCGATGATCTTCAAGGACTAAGCCTAAATGAGTTGCAGCAACTGGAGAAAAAGCTTGAAAGTGGACTCGACCGTGTGATTGAGATAAAGGAAAAGCAGATGATGGGTCAGATTTCTGAACTTCAGAAAAAGGGAATCGTGTTGGAAGAAGAGAACAAGCATTTAAAGAAAAAGCTAGCGGAGACGGAGATGGAGGCTGTGCTGCGTAAAGCAACAATGCATTTTTTGATGGAGTCAAACATGGGAATGCAAGAAGAAGGTGTTTCATTAGAGTCTACAAACAACGTTAGCAGTTGCATTAGTGACCCTCCTCTTGAAGATGGTTCCTCGGACACATCTCTCAAGTTAGGGTAA 681 0.4185 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSSSSMNDIIIKYNTHSPGMDKLDRPSLEMQLETATKLSKEIAERTQELSWMKGDDLQGLSLNELQQLEKKLESGLDRVIEIKEKQMMGQISELQKKGIVLEEENKHLKKKLAETEMEAVLRKATMHFLMESNMGMQEEGVSLESTNNVSSCISDPPLEDGSSDTSLKLG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01713 226 Coils Coil 121 141 - -
Vian4g01713 226 MobiDBLite consensus disorder prediction 196 226 - -
Vian4g01713 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian4g01713 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian4g01713 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian4g01713 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian4g01713 226 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Vian4g01713 226 Gene3D - 14 106 IPR036879 GO:0003677|GO:0046983
Vian4g01713 226 Pfam K-box region 89 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian4g01713 226 Coils Coil 147 174 - -
Vian4g01713 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian4g01713 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vian4g01713 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian4g01713 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian4g01713 226 FunFam Transcription factor, MADS-box 13 83 - -
Vian4g01713 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian4g01713 226 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01713 Vian-Chr4 33210887 33216756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01713 1 226 MADS-box Gene Family AT2G22540 53.390 2.62e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian4g01713 K-box 6.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01713 - - gmx:100776749 337.035