Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01710 ATGTTGTGCTCATCGCGTAACCTTGGACTTCATTTCACTTCAATTGGACTGTCTCGCGACGTTAGGCTGTACAATAATCATGGAAGCTGTTGCTTTTATACGTTTGGTGGTGGCATACCTAAAATCATGAGGAGATTGACAAGGAGAGCAATCATGAGGAGTCTGACAAGGAGATCGGTCCCCACGATGGTGATGACCATGGACATGGTGGCAATGTCAAGGTCATATAATATAGCAGGAAAACCAATCGCGATTCCATTCATCCCTGCCCTTGGTATTATTGGGTTTGCTGTTTTTGGTCTCAAGCCTCTTGTGCGCCTGAGCAGGAAGATGTTTTGCCAAGAAAGTACTGATAGAAGTTGGAAGAAAAGTAGTTCATATTATATTTTGACATCTTACTTTCAACCTATGCTGCTGTGGACTGGAGTGATGCTCATCTGCAGGGATTTAGATCCATTAGTCCTACCATCAGAAACTAGTCAGGCTATGAAACAACGGCTGCTGAGTTTTGTAAGATCTTTGTCAACCGTGCTTACTATTGCTTACTGTTCTTCAAGCTTAATTCAACAGGCACAAAAAATTTGTATGGATGCAAATGACTCCTGTGATGAAAGAAATATGAGCATTGATTTTACTGGGAAAGCTGTATACACTGCAATTTGGGTTGCTGCTGTGTCATTGTTCATGGAGTTACTGGGTATCTCCACACAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTGATTTCCCTTGCAGGTCGCGAGATATTTACAAACTTCCTTTCAAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGCATGTTGGCTGGTGGTCACCAACAAGAATTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTATAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGTATAAAGACTCACCTGGCTATCAGTCACTTGGATGTTAACAAGATTAATAGTATAATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAAAGAAAATTGCACAGAAGGGTTTTTCTAGAGAACATTGATCCAGAAAATCAGGCTCTTATGATATTGGTGTCCTGCTTTGTTAAAACTTCACGTTCTGAAGAGTACCTACGTGTAAAGGAGGTAATCCTCTTGGATCTTCTCAGAGTTATAAGTCATCATCGAGCTCGGCTAGCCACACCCATCCGCACAGTTCAAAAAATGTGCAGTGATACTGATTTCGATATTGATCCATTTGATGACACAGTTTCTTCTCGTTCCAGATCAACGAAAAACCGTCCTTTTGCACTGATAGATCCACCTTATAAAGTTAAACCGTCATCTCATTCAACTATTACAAATGAGGACAGAGATAGTAAGACAGATGAAACCTTGCCATCTGACTTCAAAGTAGACTCTGATGAATTTTCTGTGACACCAAGTTCGGTCCAGAAGACCTCCAAATCCAAAAAGTCCAAAAAGGAAAGAACAGGAAACACTGCAAAGGAAACATCCAAAATTTTGCCAACATCCAATGAGTCTGGTTGTGGAGAGACTACAACACCATCAAAGCTAGATGATGAGAAATCTGTTGTTTCAGAGCCTTCATCATCATCATCATCATCATCACTTAGTCATTCTTCAGATGAGAATATTACTCTTGATGCTGCTCTGCTGGGCACAGAGAGAAGAACTATTGCAGTTGATGAAGAATTGGTTGATTCTATCCCTTCAGAATCACAAGAAGTTGCATCCCATCAGAATGGGAGCGAACCTCCTATTGGCAAGGATAAGAAGGATGAGCAGAATAGATGTTGA 1896 0.4061 MLCSSRNLGLHFTSIGLSRDVRLYNNHGSCCFYTFGGGIPKIMRRLTRRAIMRSLTRRSVPTMVMTMDMVAMSRSYNIAGKPIAIPFIPALGIIGFAVFGLKPLVRLSRKMFCQESTDRSWKKSSSYYILTSYFQPMLLWTGVMLICRDLDPLVLPSETSQAMKQRLLSFVRSLSTVLTIAYCSSSLIQQAQKICMDANDSCDERNMSIDFTGKAVYTAIWVAAVSLFMELLGISTQKWLTAGGLGTVLISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVGWWSPTRIRGSDCEAVHIPNHNLSINVVRNLSKKSHWRIKTHLAISHLDVNKINSIIADMRKVLAKNPQVEQRKLHRRVFLENIDPENQALMILVSCFVKTSRSEEYLRVKEVILLDLLRVISHHRARLATPIRTVQKMCSDTDFDIDPFDDTVSSRSRSTKNRPFALIDPPYKVKPSSHSTITNEDRDSKTDETLPSDFKVDSDEFSVTPSSVQKTSKSKKSKKERTGNTAKETSKILPTSNESGCGETTTPSKLDDEKSVVSEPSSSSSSSSLSHSSDENITLDAALLGTERRTIAVDEELVDSIPSESQEVASHQNGSEPPIGKDKKDEQNRC 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01710 631 Gene3D - 153 271 - -
Vian4g01710 631 MobiDBLite consensus disorder prediction 528 547 - -
Vian4g01710 631 Gene3D - 272 325 IPR023408 -
Vian4g01710 631 MobiDBLite consensus disorder prediction 446 576 - -
Vian4g01710 631 Pfam Mechanosensitive ion channel 214 421 IPR006685 GO:0016020|GO:0055085
Vian4g01710 631 MobiDBLite consensus disorder prediction 599 631 - -
Vian4g01710 631 MobiDBLite consensus disorder prediction 476 496 - -
Vian4g01710 631 SUPERFAMILY Sm-like ribonucleoproteins 257 327 IPR010920 -
Vian4g01710 631 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 48 627 IPR045042 -
Vian4g01710 631 MobiDBLite consensus disorder prediction 558 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01710 Vian-Chr4 33174750 33185676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01710 70 630 Mechanosensitive Ion Channel Family AT5G10490 51.342 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01710 K22047 - gmx:100797302 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01710 4 33174750 33185676 Vian4g01710 4 33174750 33185676 ECH