Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01709 ATGGTCTGTCCAGGTTCAACGCAGCTGTCTCATGACGTTAGGCTCAACAGTAATATTGGACTCTGTGGTTTTCATCGTCATAATCGGATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCACCGGGTAGCTTGAAGCAAGACTCTTCGGCACTCCATCTTTTAAGTAGACTACATGCTCCAATAAGGCACGTGCCTTCCAAATGTAATGTTTTTATATGTCGGTCTGTCCTAATACCGGGTGGAGGGAGTGGAACTCCTCTGATGAAATCTGCTGGTGTTATTTTAACAAGGTCATATGATGCTTTACAAAGGAACCCCGTTTTGCTTCAATTGATCCCAGCCCTTGGTATCATTGCCTTTGCTGCTTGTGGTCTTGAGCCACTCATTCGACTTAGCAGGGTTTTGTTCCTTCAAAGAACTGACAGCAGTTGGAAGAAAAGTAGTTCGCGATGTATTATGACATCTTATTTTCAGCCATTGTTGTTATGGATTGGGGCAATGCTCATATGCAGGGCATTAGATCCAGTAGTCCTACCATCTAAGTTCAGCCAGGTTGTGAAGCAGCGGCTTCTGAATTTTGTGAGATCTTTGTCAACGGTGATTTCGTTTGCTTATTGTTTATCAAGTTTAATTCAACAAGCACAAAAATTCTTTGTGGAGGCAAATGACTCCAGTGGTTCAAGAAATGTGGCCTTTGATTTGGCTGGGAAGGGAGTATATGGTATTGTTTGGGTTGCTGCCGTATCATTGTTTATGGAGATGTTAGGTTTCTCCACACACAGGTGGTTAACTGCTGGTGGTTTGGGCACTGTATTGCTCACTCTGGCAGGTCGTGAGATATTTACAAACTTTCTGTCAAGCATAATGATCCATGCCACTCGGCCATTTATTGTGAACGAGTGGATTCAAACGAAAATTGATGGATACGAGGTTTCTGGCACAGTAGAGCATGTAGGATGGTGGTCACCGACCATTGTTAGGGGCGATGACCGTGAGGCAGTTCATATTCCTAACCACAAGTTTTCTGTAAATATTGTGAGAAATCTGACCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTATCTGATATGCGCAAGGTTTTGTCAAAGAATCCTCAAGTAGAGCAGCAAAAATTGCACAGAAGGGTCTTTTTGGAGAATGTTAATCCTGAAAATCAGGCTCTTATGATATTGATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTCGTCAGTTATCATCGCGCCAGGCTAGCCACTCCCATCCGCACAGTTCAGAAAATATACAGTGAGGCTGACTCGGACAATATACCTTTTGGGGACTCAGTTTTCACTAGATCTAGAGCTGCAAATCGCCCATACCTACTGATAGAACCACCATATAAAGTTCATGGTGAAGATAAAGTTAAACCCTCAACCGGTGCAGCTCGCACAAATGAGGAAAAGGATTCCAAGATTGATGAAAGCATGGCATCTGACACCAAAGGAGATGAGAATTTTGGAGCAACATCTACCTCGTCAGCTGATGTAAACAACTCCAGGGATAAATCCCAGTCATTTTCTGAATCACAGACTAAAAGCGAAAATTCAGTAGATGAACGAAAGGGAAGTACAGTTCCTGTATCTAGAAACCAGGCTCAAAGTACTGAGCTTGAATCCTCTACTGTTGCTACCATGAGACCATTGCTGCTACTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCGGTCTCTTCGTCATCGGTTAGACCTTCCCTGGAAGAGAACATTTTTCTTGGGGTTGTCTTAG 1884 0.4246 MVCPGSTQLSHDVRLNSNIGLCGFHRHNRMGVGRLHLVTINLSPGSLKQDSSALHLLSRLHAPIRHVPSKCNVFICRSVLIPGGGSGTPLMKSAGVILTRSYDALQRNPVLLQLIPALGIIAFAACGLEPLIRLSRVLFLQRTDSSWKKSSSRCIMTSYFQPLLLWIGAMLICRALDPVVLPSKFSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFVEANDSSGSRNVAFDLAGKGVYGIVWVAAVSLFMEMLGFSTHRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFSVNIVRNLTQKSHWRIKSYIAISHLDVNKINNIVSDMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSYHRARLATPIRTVQKIYSEADSDNIPFGDSVFTRSRAANRPYLLIEPPYKVHGEDKVKPSTGAARTNEEKDSKIDESMASDTKGDENFGATSTSSADVNNSRDKSQSFSESQTKSENSVDERKGSTVPVSRNQAQSTELESSTVATMRPLLLLHSQSKMKRNLRSLRHRLDLPWKRTFFLGLS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01709 627 MobiDBLite consensus disorder prediction 566 586 - -
Vian4g01709 627 Gene3D - 298 351 IPR023408 -
Vian4g01709 627 MobiDBLite consensus disorder prediction 528 558 - -
Vian4g01709 627 MobiDBLite consensus disorder prediction 497 526 - -
Vian4g01709 627 Gene3D - 196 297 - -
Vian4g01709 627 MobiDBLite consensus disorder prediction 497 586 - -
Vian4g01709 627 Pfam Mechanosensitive ion channel 243 446 IPR006685 GO:0016020|GO:0055085
Vian4g01709 627 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 581 IPR045042 -
Vian4g01709 627 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01709 Vian-Chr4 33166823 33172246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01709 9 562 Mechanosensitive Ion Channel Family AT1G58200 60.638 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01709 K22047 - gmx:100777815 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01709 4 33166823 33172246 Vian4g01709 4 33166823 33172246 ECH