Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01702 ATGTCGGAGAAGAAGACCAGAGTGTCTTTTACGGAAAAAGATGCTGTCGCGCTGATGCAGAGGTACGACCCAACTACAGTGTTTATCTTACTTCAAGAAGTTGCGCATTACGCTAAGCCAAAGATTGATTGGAGCGAGTTGGTGAAGAAAAGCGCAACTGGGATTTCTAATGTTAGGGAATATCAAATGCTGTGGCGGCATTTGGCCTACCGGCATTCTTTGCCGGAAAATTTTGAAGTTGGGGCTGAACCTCTGGATGATGACAGTGACTTAGAGTGTGAGCTAGAAGAATTACCTCATGTTAGTGTGGAATCTGCATCAGAGGCGGCTGCATGTGTGAAGGTAATGATTGCTTCTCGCACACTCAGTGACTCTGCCCCTAGTAGCTCAACAATCGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTGCAACACTTATTGAAAGTTCACAACCCTCTAATTTGATGCAAGGGACAAACATTGTTTTTCCAGTCACTGTTCAGAGACAAACATTGCCAACACACCCTGTACCACCAACAGATGGTATTGAATCTAAGGGATTAGTTGGTGGTAATTTGGCGTCCAAAAGAAAACGGAAAACATGGTCAGAGGAAGAGGACATACAACTACGAGCTGCTGTTCAGAGATGGGGCGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAACTTTCCTATTAAGAGAAGTCCTACACAGTTAGCACAGAGGTGGAGCATTTTACGAAAGAAAGATGGCACTGTCAATTCTGGAACCATATCAACCAGCTCACAATATACTACTGCTGAACAACTGGCAACCCGACACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGAGTGTCAGATCCTGTTAAGACATCCACATCAGTTAAAAATCAAGTGCAGATTAGAAATACTGTGGAGAAGGTTGCCACTAGTTTTGTACCACCTCAACAGCCATCTCGGCAAGCTTCTTTGTTGGGATCTGATTCTCATTCTCATGTAAAACCCAAACTAGTAGACGAAAAACTAATCTCGAAGGGTAATATAATTTCAAATCCTGTGTTAAAATCTACCACAGCTGCTCCTGGGACACGAATTGATTCACCTTCAAATACTATATCACATGTTAAAATTGCTCCAGTAAAACACAACGTAGACACCAAGCCTGCAGTAAGCTCTTTGACAAAACCATCCGTTTCTACCAATATGCCTTCTGATCCAAAGAACAAACCGACTACTTCTTTGGCTGATAAAGTTCCATTGGAGCAAGATGCTAATTCCACTAAAGATGATCCCAGCTCCAGACCGAAAGATCAAACACCAAAAAACGAAGCTCCTAAAGTTACTATTGACAGCCAGGTCAATAGCAACTTAGAGAAGGGAAGATTAGATATAGGTCAAGCGAAGATTGTGCCTGTTAGTAGTGGGGAGGAAAGTTTGAAAGATAAAGCAAGTCCAGTCACGGATGAAAAACAACCAAGTGTTACTAAAGCAAATGCAGCGGTGTCCGAAAACCAAGGAAGTGTTAAGAATGCTACTGAGAATAGCAACCTTGACAAAGGAAACCTAACTTCTAATCAAGACAAGAAAACTTCAATCAATGAAAGTTCAAACAATCAAAACATAAATGACAAACATGTAAATTTGCCAGTACAAGATGAAGGCAGCCAAAGTGCCAAGGTGGTAAAACTGATGGAGAATGTTGAGTGA 1740 0.419 MSEKKTRVSFTEKDAVALMQRYDPTTVFILLQEVAHYAKPKIDWSELVKKSATGISNVREYQMLWRHLAYRHSLPENFEVGAEPLDDDSDLECELEELPHVSVESASEAAACVKVMIASRTLSDSAPSSSTIEAPLTINVPVCHSSATLIESSQPSNLMQGTNIVFPVTVQRQTLPTHPVPPTDGIESKGLVGGNLASKRKRKTWSEEEDIQLRAAVQRWGEGNWATMAKGDNFPIKRSPTQLAQRWSILRKKDGTVNSGTISTSSQYTTAEQLATRHSLSLALDMPFKKLTAPGVSDPVKTSTSVKNQVQIRNTVEKVATSFVPPQQPSRQASLLGSDSHSHVKPKLVDEKLISKGNIISNPVLKSTTAAPGTRIDSPSNTISHVKIAPVKHNVDTKPAVSSLTKPSVSTNMPSDPKNKPTTSLADKVPLEQDANSTKDDPSSRPKDQTPKNEAPKVTIDSQVNSNLEKGRLDIGQAKIVPVSSGEESLKDKASPVTDEKQPSVTKANAAVSENQGSVKNATENSNLDKGNLTSNQDKKTSINESSNNQNINDKHVNLPVQDEGSQSAKVVKLMENVE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01702 579 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 558 - -
Vian4g01702 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 255 IPR017930 -
Vian4g01702 579 ProSiteProfiles Myb-like domain profile. 197 251 IPR001005 -
Vian4g01702 579 SMART sant 201 253 IPR001005 -
Vian4g01702 579 Pfam Myb-like DNA-binding domain 202 247 IPR001005 -
Vian4g01702 579 CDD SANT_TRF 203 252 - -
Vian4g01702 579 MobiDBLite consensus disorder prediction 455 470 - -
Vian4g01702 579 MobiDBLite consensus disorder prediction 398 422 - -
Vian4g01702 579 MobiDBLite consensus disorder prediction 433 454 - -
Vian4g01702 579 MobiDBLite consensus disorder prediction 499 565 - -
Vian4g01702 579 MobiDBLite consensus disorder prediction 397 571 - -
Vian4g01702 579 SUPERFAMILY Homeodomain-like 200 253 IPR009057 -
Vian4g01702 579 Gene3D - 196 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01702 Vian-Chr4 33119830 33128884 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian4g01702 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01702 - - gmx:100799956 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01702 4 33119830 33128884 Vian4g01702 4 33119830 33128884 ECH
Vian7g02082 7 35533493 35537556 Vian4g01702 4 33119830 33128884 PCT