Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01697 ATGGCAAGTTCTGAATCCGCAGGTTCCATTGACAGACCTGTTAATCCTGAAAATCTTCCGTATTCAGGCTGTGGAAATAATGATCAACAAGCTAAAGAAACTGATTTGCTGAGAAGCTCCATTTATGGTTCAGTTGATCAAATCTGTGAAGTTACAGAACCATCTCTAATTCCTTTTGGATTAGAAGGGAATGACGAGGAATGCTCAGTTATTAGTTCGGTTTTGCCTACCATCCATGAAGATGATTCTAAAATTCTCCATCCAGACATCGAAGCATCACTAAATGAATATCCAAGCCTTAGGGAAGATGTAGTACAATTACAAGAAATTTCCAACAATGAGATCATTGTAAATGGAAGTTCTGTGGTGAAAAGTAGTTTCAAGAGATCTATACTTGGTTCATCCAGCCAGTCAGAACTGAAACAGGTAGACAATAGAAGTGAAAACAAGGGTTGTTTACCTTCTGGGAATATTCCAAGATATTTGAGTCTTGAACCATCACTTGCAATGGACTGGCTTGAGATATCTTGGGAGGATTTACGAATTAAAGAGCGTGTTGGTGCTGGTTCATTCGGTACAGTGTACCGTGCTGAATGGCATGGATCGGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGAAGATCAGTTGAAGGAGTTCCTGAGAGAGGTTGCAATAATGAAGCGGGTTCGCCATCCGAATGTGGTGCTCTTCATGGGCTCTGTTACAAAACGCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTGATACACAGACCAGCATCTGGTGAAATTCTGGACAAGAGGAAGAGACTGCGGATGGCATTGGATGTGGCTAAAGGAATCAATTATCTCCACTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGTTAGTGGATAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCGTCCAAATCAGTTGCTGGAACACCCGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCCTCCAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAGCCATGGAGTGGACTTAGCCCTGCACAGGTAGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTGGCTATCCCTCCAAACATCTCCCCAGCATTGGCCTCCCTCATGGAATCTTGTTGGGCGGATGACCCTAGTGAGAGGCCATCTTTTGGTAGCATAGTTGAGTCACTAAAAAAGCTGGTAAAATCTCCGGCAGAACTGATAAAGATGGGAGATACATAG 1353 0.4316 MASSESAGSIDRPVNPENLPYSGCGNNDQQAKETDLLRSSIYGSVDQICEVTEPSLIPFGLEGNDEECSVISSVLPTIHEDDSKILHPDIEASLNEYPSLREDVVQLQEISNNEIIVNGSSVVKSSFKRSILGSSSQSELKQVDNRSENKGCLPSGNIPRYLSLEPSLAMDWLEISWEDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFHEDQLKEFLREVAIMKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEILDKRKRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWADDPSERPSFGSIVESLKKLVKSPAELIKMGDT 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01697 450 CDD STKc_MAP3K-like 186 434 - -
Vian4g01697 450 SMART serkin_6 180 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01697 450 Gene3D Transferase(Phosphotransferase) domain 1 259 445 - -
Vian4g01697 450 MobiDBLite consensus disorder prediction 1 28 - -
Vian4g01697 450 Gene3D Phosphorylase Kinase; domain 1 173 257 - -
Vian4g01697 450 ProSitePatterns Protein kinases ATP-binding region signature. 186 207 IPR017441 GO:0005524
Vian4g01697 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Vian4g01697 450 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 111 439 - -
Vian4g01697 450 ProSiteProfiles Protein kinase domain profile. 180 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01697 450 FunFam Serine/threonine-protein kinase isoform 1 170 258 - -
Vian4g01697 450 Pfam Protein tyrosine and serine/threonine kinase 180 434 IPR001245 GO:0004672|GO:0006468
Vian4g01697 450 PRINTS Tyrosine kinase catalytic domain signature 361 383 IPR001245 GO:0004672|GO:0006468
Vian4g01697 450 PRINTS Tyrosine kinase catalytic domain signature 295 313 IPR001245 GO:0004672|GO:0006468
Vian4g01697 450 PRINTS Tyrosine kinase catalytic domain signature 342 352 IPR001245 GO:0004672|GO:0006468
Vian4g01697 450 PRINTS Tyrosine kinase catalytic domain signature 405 427 IPR001245 GO:0004672|GO:0006468
Vian4g01697 450 PRINTS Tyrosine kinase catalytic domain signature 254 267 IPR001245 GO:0004672|GO:0006468
Vian4g01697 450 FunFam Serine/threonine-protein kinase CTR1 259 444 - -
Vian4g01697 450 SUPERFAMILY Protein kinase-like (PK-like) 157 433 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01697 Vian-Chr4 33054214 33058819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01697 96 448 MAP Kinase Kinase Kinase AT4G24480 73.938 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vian4g01697 PK_Tyr_Ser-Thr 2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01697 - - gmx:100808435 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01238 7 20557323 20559952 Vian4g01697 4 33054214 33058819 PCT