Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01695 ATGTACGATCCCATGAACCAGATCGTTCCCGCCGAAGACAACGACGCCTCTGACCAACACATCCATTACAGCTCCCACAGTATAGAAAACGTTGGCGCCATCGTCGAACACGTTTCCGCCGACTCCCTTTACGTTCCACCCCCTGAAATCTCTATCCACGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTCACACCTGATAAGGCAGTCCAAGCAGTTTTATTGCTCTTAGGAGGAAGTGAACTAACTTCGGGCTCGCAATGTGCGGAGGAACTATCCCCTCAAAATCATGCGGGTGCAGCAGAATTTCCTGCAAGATGCAGTCTACCACAGCGAGTAGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGACCAAGAGTCAGGACAGGAGGCTGTTCAATCTGAAACCTCTTCAAAATCCACTCCAATGATGCGAAGGGGGCCCTCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACTCTCTCTTGTGCCACTTGAGCAGGTTGGTGTGGGTAATAATAATGACTTGGACTGTGGGAGCATTATCCCTGCACAACATGACAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 807 0.4771 MYDPMNQIVPAEDNDASDQHIHYSSHSIENVGAIVEHVSADSLYVPPPEISIHDSSQLTLSFRGQVYVFDAVTPDKAVQAVLLLLGGSELTSGSQCAEELSPQNHAGAAEFPARCSLPQRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGSDQESGQEAVQSETSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQELSLVPLEQVGVGNNNDLDCGSIIPAQHDNHVNDNKALVSDR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01695 268 MobiDBLite consensus disorder prediction 161 194 - -
Vian4g01695 268 PANTHER GATA TRANSCRIPTION FACTOR 28 24 235 IPR045280 GO:0006355
Vian4g01695 268 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
Vian4g01695 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 227 - -
Vian4g01695 268 Pfam CCT motif 120 162 IPR010402 GO:0005515
Vian4g01695 268 Pfam tify domain 55 86 IPR010399 -
Vian4g01695 268 Gene3D - 176 229 IPR013088 GO:0006355|GO:0008270
Vian4g01695 268 Pfam GATA zinc finger 189 217 IPR000679 GO:0006355|GO:0043565
Vian4g01695 268 ProSiteProfiles CCT domain profile. 120 162 IPR010402 GO:0005515
Vian4g01695 268 CDD ZnF_GATA 187 226 IPR000679 GO:0006355|GO:0043565
Vian4g01695 268 ProSiteProfiles GATA-type zinc finger domain profile. 188 234 IPR000679 GO:0006355|GO:0043565
Vian4g01695 268 SMART tify_2 51 87 IPR010399 -
Vian4g01695 268 MobiDBLite consensus disorder prediction 153 200 - -
Vian4g01695 268 SMART GATA_3 177 228 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01695 Vian-Chr4 32984382 32987826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01695 34 267 Tify Gene Family AT4G24470 56.967 1.19e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian4g01695 CCT 6.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01695 - - pvu:PHAVU_009G035400g 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02073 7 35178430 35182017 Vian4g01695 4 32984382 32987826 PCT