Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01680 ATGATCACTCTGCCACTCACCACCTTCCACCATGACCTTTTCCTTTTTTACTGTTATTTTATTCTCCTCACGCACTTTCCGCCACCGGCCACCGCGCAGCTTCCCAACGACCACACGCCACCGCCGCCGCTGGACCGCTTATCCAAGCTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATTCTGGTGGCGGTGTTCTTCTTCCTCGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGAAGTATGCGAGGGAGGTTCGACCTGTCCATCTCGATCACGCGTCGGCCACGTGGTCTTGACCGCGAAATCATCGAGACCTTCCCCACCTTCGTCTACTCCACCGTGAAGAGCCTCAAGATAGGACGCGCCACGCTGGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGCGGAAACGCTGCGTTTGATACCCAAGTGCAGCCACGTGTTCCACCCAGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTCTGTCGTGCCAACCTTGTCCCCAAACCCGACGACCCCTCCTTTGTTTCCATCCCAATCCCGGATCCGGTTCAACCCGTTTTAAACTCCCCGGTCCAACCCGAGCCCGCGGTTTCTCCCAAGCCCAATGATTTCATTAATCGCAACCGTTCACCGCGGTCAAGGTCAACGGGTTTCAGCATCGCCAGCTTGATTCCACGATCTCACTCGACGGGTCACTCGCTGGTTCAACCGGGAGAGAATTGCGAGCGGTTCACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTGATGACTTCTACGACGCTGAGTCGCACCAAGAGTTGCGGCTTGAGCCTGGGATTCACGCGCGAGAACAGTGGGAGGAGGGGTTACAGGACCAGAAGCGTTGGTCACAGTCTTAGTCCTCACGTGACAAGAGGCATGGGTGGCAGCAGCAGCAGCCCTCACGTGCGGGGACACGACAGACGGTGGTTTTTTCAGAGCCCTCCGGCAAAGGACTCCATTAAGGAAGATGTCGGCGAACGTTCTTCGGATCGGCTTTTCTCGGAGACCACGAAGGATACTGAGAATTAA 1083 0.5743 MITLPLTTFHHDLFLFYCYFILLTHFPPPATAQLPNDHTPPPPLDRLSKLKFDKSMAIVLVILVAVFFFLGFLSVYTRQCAERSMRGRFDLSISITRRPRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEAETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLVPKPDDPSFVSIPIPDPVQPVLNSPVQPEPAVSPKPNDFINRNRSPRSRSTGFSIASLIPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMTSTTLSRTKSCGLSLGFTRENSGRRGYRTRSVGHSLSPHVTRGMGGSSSSPHVRGHDRRWFFQSPPAKDSIKEDVGERSSDRLFSETTKDTEN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01680 360 PANTHER RING FINGER DOMAIN-CONTAINING 40 180 - -
Vian4g01680 360 MobiDBLite consensus disorder prediction 289 360 - -
Vian4g01680 360 FunFam E3 ubiquitin-protein ligase ATL6 91 178 - -
Vian4g01680 360 Pfam Ring finger domain 129 172 IPR001841 -
Vian4g01680 360 MobiDBLite consensus disorder prediction 197 226 - -
Vian4g01680 360 SUPERFAMILY RING/U-box 124 180 - -
Vian4g01680 360 CDD RING-H2_EL5-like 129 172 - -
Vian4g01680 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
Vian4g01680 360 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vian4g01680 360 MobiDBLite consensus disorder prediction 337 360 - -
Vian4g01680 360 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01680 Vian-Chr4 32811748 32812830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01680 30 293 Rapid Response to Elicitors AT3G05200 44.526 8.82e-68 217
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01680 4 32811748 32812830 Vian4g01680 4 32811748 32812830 ECH
Vian7g00047 7 2065283 2070114 Vian4g01680 4 32811748 32812830 PCT