Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01662 ATGGTCATAATTTCTTTCGAGAAAGCTTTTCATGAATTTCCATCAAATCTGAGGATACTCGCTGTTGACACGGATTCTACTGTTCTTGAATTCATCAAGAAGATATGTAACAAATATTGTTATGAAGTTATCACATGCACAGAATCGTTACGTGCTACTGAGATTTTGCAGGAAAGAAAACACGGTATTGATTTAGTATTGATGGAGGTTCATATGCCAAAGATGGATGGCCATGAATTCTTACTTGCCAATAAAAAAATTGATGTTCCTATCATCGTGATGTCTTGGGATGACAACAAAAAATCTGTAATGAAGAGTATAAAACTTGGAGGTTGTAATTACTGGATTAAGCCTTTGCATGAGGATCGACTCAAGAACATAAAAGTTGATAATGTCGGTGAATCACCTTCGAAAAAGAAATCTCGTATAATATGGACATCAGAACTGCATGGTAAATTTGTCAAAGCTGTCAATCAAATTGGACTTGCTAATGCTGTGCCAAAGAAACTTGTTGAGCTCATGAATATCCCTGGTTTGACAAGAAACCATGTTGGTAGTCACTTACAGAAATATAGAAATACTTTGAAGAGAAAACCTCAGCAATCTGCTACAGATATACCACTGCATAACCATCTTCATGCAGAAGAAGCTTTGAGTATGGCACTTAATCACCCAATGGCTCCCTATACTACTAACTTTGTTTTTCCACAGTCCTCGGAAACTATGCCTAACAGTGTTTCAGTAGATACATTGCAACAACAGCGGGAAATGCAGCAGTGGATGGAGTCTTTCTTTTTATGA 801 0.3695 MVIISFEKAFHEFPSNLRILAVDTDSTVLEFIKKICNKYCYEVITCTESLRATEILQERKHGIDLVLMEVHMPKMDGHEFLLANKKIDVPIIVMSWDDNKKSVMKSIKLGGCNYWIKPLHEDRLKNIKVDNVGESPSKKKSRIIWTSELHGKFVKAVNQIGLANAVPKKLVELMNIPGLTRNHVGSHLQKYRNTLKRKPQQSATDIPLHNHLHAEEALSMALNHPMAPYTTNFVFPQSSETMPNSVSVDTLQQQREMQQWMESFFL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01662 266 SUPERFAMILY CheY-like 15 127 IPR011006 -
Vian4g01662 266 NCBIfam myb-like DNA-binding domain, SHAQKYF class 140 193 IPR006447 GO:0003677
Vian4g01662 266 ProSiteProfiles Response regulatory domain profile. 18 132 IPR001789 GO:0000160
Vian4g01662 266 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 213 IPR045279 GO:0009736
Vian4g01662 266 Gene3D - 16 139 - -
Vian4g01662 266 ProSitePatterns DNA polymerase family B signature. 21 29 IPR017964 GO:0000166|GO:0003676
Vian4g01662 266 Gene3D - 140 198 - -
Vian4g01662 266 Pfam Response regulator receiver domain 19 126 IPR001789 GO:0000160
Vian4g01662 266 FunFam Two-component response regulator 136 198 - -
Vian4g01662 266 SUPERFAMILY Homeodomain-like 138 197 IPR009057 -
Vian4g01662 266 CDD REC_typeB_ARR-like 19 127 - -
Vian4g01662 266 SMART REC_2 17 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01662 Vian-Chr4 32585755 32587064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01662 12 197 Response Regulator Gene Family AT4G31920 34.934 1.32e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian4g01662 Response_reg 2.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01662 - K14491 var:108330470 541.576